Zhen,

Again I ask you: what k-point sampling are you using in your
calculations? The reason I am being pushy on this is because I am very
familiar with an extreme case, which is graphene. You can get very
reasonable results when you perform calculations for graphene with a
low k-sampling, if you enforce symmetries - for example, setting

LatticeConstant    xxxx Ang

%block LatticeVectors
0.5   0.866025404  0.0
-0.5  0.866025404  0.0
0.0   0.0   10.0
%endblock LatticeVectors

%block kgrid_monkhorst_pack
9  0  0  0.0
0  9  0  0.0
0  0  1  0.0
%endblock kgrid_monkhorst_pack

but when you do a variable-cell calculation, in the end, you will find
a sizeable deviation, in the angle between the in-plane lattice
vectors, from the expected 60 degrees. It only goes away when you set
a pretty high value for the MP grid, such as 21x21x1. Being extremely
pushy, what you should do is convergence studies in your parameters,
if you still haven't done so. It could well be that some parameters in
your calculation are not good, which happens often when systematic
convergence studies are not performed. Please disregard this if you
have performed said studies, but contact you supervisor if you don't
know how to perform one - he/she should be able to teach you how to do
this. If not, let us know.

It could be that, as Derek states, you could need semicore states or
non-linear core corrections to be included in some cases. It would be
advisable to check on the literature if this is the case for your
metallic Ti.

Now, one correction. Phonons in siesta are not calculated by
frozen-phonon calculations, although siesta (and any other ab initio
software, for that matter) can perform frozen-phonon calculations.
What siesta does is a calculation of the force constant matrix in real
space by finite differences. Then the phonon frequencies are
calculated by diagonalization of the FC matrix.

Now the following wild guess occurs to me... Your phonon softening
seems to occur for large values of the phonon wavevector, q, and for
small values it's pretty well-behaved. Could it be that your supercell
is not large enough to support such a mode, and then it gives you this
spurious softening? Phonon experts on the list, am I just guessing it
wrong?

Marcos


On Thu, Mar 4, 2010 at 4:54 PM, Zhen Huang <[email protected]> wrote:
> Dear Derek and folks-
> Thanks for you responds. I have tried ABINIT LDA from SIESTA website and it
> also give very small lattice constants without any treatment to spin (2.67
> Ang comparing to 2.95 Ang from textbook). Further, the one of the angles
> changed from 120 to 108 degree. I could not tell what is the problem is. I
> have used PWSCF to obtain phonon dispersion of Ti before and it worked out
> fine. Although, I have never gone into the details of Isaev's paper.
> The reason I switch to SIESTA, is the phonon calculation is based on frozen
> phonon and when it comes to large system it is much faster than Quantum
> espresso. However, seems at this point, I am not able to get the Ti running
> properly.
> Best Regards
> -------
> Zhen (Alex) Huang
> Ph.D. Student
> Nanoscale Transport Research Group
> Laboratory for Computational Methods in Emerging Technologies
> Cooling Technologies Research Center
> School of Mechanical Engineering
> Purdue University
> Tel: 765 237 9733
>

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