It seems as though you are compiling a with a gcc and trying to compile together with older compiled libraries from intel. Try make clean then make...
2011/10/4 Dmitry G. Kvashnin <[email protected]> > Dear siesta users! > > > I'll try to compile siesta-trunk-364 on Moscow state university cluster: > MPI: openmpi-1.5 > COMPILER: intel-12.0 > > Configure process was well. But when I want to make, I got the following > error: > > > Compilation architecture to be used: x86_64-unknown-linux-gnu--Gfortran > If this is not what you want, create the right > arch.make file using the models in Src/Sys > > Hit ^C to abort... > (cd FoX; touch arch.make ; \ > > CONFIGURE="/home/users/cvashnini/src/siesta-trunk-364/Src/FoX/configure"; \ > $CONFIGURE > VPATH="/home/users/cvashnini/src/siesta-trunk-364/Src/FoX" \ > FC="mpif90" FCFLAGS="-g -O2" \ > --enable-wcml || false ) > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking for linker flag to name executables... -o > checking for Fortran compiler default output file name... conftest > checking whether the Fortran compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU Fortran compiler... no > checking whether mpif90 accepts -g... yes > checking for Fortran flag needed to allow free-form source for .f90 > suffix... none > checking for gcc... gcc > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking for fixed form Fortran preprocessor features... done. > checking whether mpif90 compiles programs with cpp directives... yes > checking whether mpif90 accepts -D... yes > checking whether mpif90 accepts -I... yes > checking whether mpif90 fulfils requested features... yes > checking preprocessing mode we may therefore use... direct > checking for Fortran flag needed to allow free-form preprocessed source for > .F90 suffix... none > checking for ranlib... ranlib > configure: Could not determine type of compiler > checking for kind number produced by kind(1.0)... 4 > checking for kind number produced by kind(1.0d0)... 8 > checking for kind number produced by selected_real_kind(6,34)... 4 > checking for kind number produced by selected_real_kind(15,300)... 8 > checking how to compile a call to FLUSH... default > checking how to compile a call to ABORT... with argument > checking for EOR character used by mpif90... LF > checking for ASSOCIATED in restricted expression bug... yes > checking for a BSD-compatible install... /bin/install -c > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for flag to alter module search path... -I > checking for suffix of module files... mod > checking whether module filenames are uppercased... no > configure: creating ./config.status > config.status: creating arch.make > config.status: creating FoX-config > (cd FoX; make) > make[1]: Entering directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX' > mkdir -p objs/lib objs/finclude > (cd fsys; make > VPATH=/home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys) > make[2]: Entering directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/fsys' > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_abort_flush.F90 > > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_array_str.F90 > > mpif90 -c -g -O2 > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_realtypes.f90 > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_format.F90 > > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_parse_input.F90 > > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_string.F90 > > mpif90 -c -g -O2 -DFC_HAVE_FLUSH -DFC_HAVE_ABORT -DFC_ABORT_ARG > -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/fsys/fox_m_fsys_string_list.F90 > > ==> Creating libFoX_fsys.a with fox_m_fsys_abort_flush.o > fox_m_fsys_array_str.o fox_m_fsys_format.o fox_m_fsys_parse_input.o > fox_m_fsys_string.o fox_m_fsys_string_list.o fox_m_fsys_realtypes.o > cp -p libFoX_fsys.a > /home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/objs/lib > for i in *.mod; do \ > cp -p $i > /home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/objs/finclude; done > make[2]: Leaving directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/fsys' > (cd utils; make > VPATH=/home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils) > make[2]: Entering directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/utils' > mpif90 -c -g -O2 -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT > -DFC_ABORT_ARG -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_mtprng.F90 > > mpif90 -c -g -O2 -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT > -DFC_ABORT_ARG -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uuid.F90 > > mpif90 -c -g -O2 -I../objs/finclude -DFC_HAVE_FLUSH -DFC_HAVE_ABORT > -DFC_ABORT_ARG -DFC_EOR_LF -DRESTRICTED_ASSOCIATED_BUG > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uri.F90 > > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uri.F90(12): > error #7013: This module file was not generated by any release of this > compiler. [FOX_M_FSYS_STRING] > use fox_m_fsys_string, only: toLower > ------^ > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uri.F90(12): > error #6580: Name in only-list does not exist. [TOLOWER] > use fox_m_fsys_string, only: toLower > -------------------------------^ > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uri.F90(417): > error #6406: Conflicting attributes or multiple declaration of name. > [TOLOWER] > scheme => vs_str_alloc(toLower(URIstring(:i1-1))) > -------------------------------^ > compilation aborted for > /home/users/cvashnini/src/siesta-trunk-364/Src/FoX/utils/fox_m_utils_uri.F90 > (code 1) > make[2]: *** [fox_m_utils_uri.o] Error 1 > make[2]: Leaving directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX/utils' > make[1]: *** [utils_lib] Error 2 > make[1]: Leaving directory > `/home/users/cvashnini/src/siesta-trunk-364/Obj/FoX' > make: *** [FoX/.FoX] Error 2 > > Has anyone known what's problem? Arch.make file attached. > Thanks for any advice > > -- > Sincerely yours, > *Dmitry G. Kvashnin* > > ================================================================ > First year of master degree study > Moscow Institute of Physics and Technology http://mipt.ru/ > 141700, Institutsky lane 9, Dolgoprudny, Moscow Region, Russia > > Junior research scientist > Emanuel Institute of Biochemical Physics http://sky1.chph.ras.ru/ > 119334, 4 Kosigina St., Moscow, Russia > ================================================================ > > > > > > > > > > > -- > Sincerely yours, > *Dmitry G. Kvashnin* > > ================================================================ > First year of master degree study > Moscow Institute of Physics and Technology http://mipt.ru/ > 141700, Institutsky lane 9, Dolgoprudny, Moscow Region, Russia > > Junior research scientist > Emanuel Institute of Biochemical Physics http://sky1.chph.ras.ru/ > 119334, 4 Kosigina St., Moscow, Russia > ================================================================ > > > >
