You may want to look at this article:
http://prb.aps.org/abstract/PRB/v79/i20/e201309
They calculate electron affinities/ionization potentials, which should
be more difficult than what you're trying to do.

Cheers,

Lucas

On Thu, Apr 12, 2012 at 6:24 AM, Ulrich Biedermann <[email protected]> wrote:
> Dear Herbert,
>
> If the unit cell for the ion is sufficiently large, Siesta prints an estimate 
> of this interaction energy as Emadel (rather than printing the warning).  I 
> have seen values like 2 eV for a 10x10x10 Angstrom cell.
>
> For the slab+ion you will always get the warning.
>
> Your simple approach of using identical unit cells for all calculations may 
> work (after substracting the Emadel from the ion calculation) in case the 
> charge remains localized on the ion.  However, if it delocalizes onto the 
> slab or induces shielding charges there is a problem. And to my knowledge no 
> solution.
>
> Regards, Ulrich.
>
>
>
> ----- Original Message -----
> From: Herbert Fruchtl
> [mailto:[email protected]]
> To: [email protected]
> Sent: Thu, 12
> Apr 2012 11:44:31 +0200
> Subject: [SIESTA-L] Adsorption energy of an ion
>
>
>> Folks,
>>
>> The manual says not to do it unless you know what you're doing, and since I
>> don't, I thought I'd ask...
>>
>> I want to calculate the adsorption energy of an ion (let's say OH- ) on a
>> metal
>> surface (let's call it M, denoting a neutral slab of a few layers). The
>> straight-forward calculation would be
>>
>> dE = E(MOH-) - (E(M) + E(OH-))
>>
>> Ideally all in the same size of unit cell. There is the problem of BSSE, but
>> I
>> understand that and know more or less how to handle it. My question concerns
>> the
>> two charged calculations (MOH- and OH-) and the effect the background charge
>>
>> that will compensate for the excess electron has on the energy. Is this
>> change
>> in the Hamiltonian big enough to make the calculated dE meaningless? I have
>> seen
>> cases where dE (after correction for BSSE, including relaxation energy) came
>> out
>> positive, which seemed chemically unlikely.
>>
>> Thanks in advance,
>>
>>    Herbert
>> --
>> Herbert Fruchtl
>> Senior Scientific Computing Officer
>> School of Chemistry, School of Mathematics and Statistics
>> University of St Andrews
>> --
>> The University of St Andrews is a charity registered in Scotland:
>> No SC013532
>>
>
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