Hi siesta users,I run a job for thin films, so it makes these errors. is there
anyone ho can give me a solution.
siesta: WARNING: Atoms 5 7 too close: rij = 0.000000 Ang
siesta: WARNING: Atoms 6 7 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 12 14 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 13 14 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 19
21 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 20 21 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 26 28 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 27 28 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 33 35 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 34 35 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 40 42 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 41
42 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 47 49 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 48 49 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 54 56 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 55 56 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 61 63 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 62 63 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 68
70 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 69 70 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 75 77 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 76 77 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 82 84 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 83 84 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 89 91 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 90
91 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 96 98 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 97 98 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 103 105 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 104 105 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 110 112 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 111 112 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 117
119 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 118 119 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 124 126 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 125 126 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 131 133 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 132 133 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 138 140 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 139
140 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 145 147 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 146 147 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 152 154 too close: rij = 0.000000
Angsiesta: WARNING: Atoms 153 154 too close: rij = 0.000000 Angsiesta:
WARNING: Atoms 159 161 too close: rij = 0.000000 Angsiesta: WARNING:
Atoms 160 161 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 166
168 too close: rij = 0.000000 Angsiesta: WARNING: Atoms 167 168 too
close: rij = 0.000000 Angsiesta: WARNING: Atoms 173 175 too close: rij =
0.000000 Angsiesta: WARNING: Atoms 174 175 too close: rij = 0.000000
AngNew_DM. Step: 1Initializing Density Matrix...
initdm: Initial spin polarization (Qup-Qdown) = 21.999999
InitMesh: MESH = 54 x 54 x 270 = 787320InitMesh: Mesh cutoff
(required, used) = 500.000 503.697 Ry
* Maximum dynamic memory allocated = 276 MBError in Cholesky factorisation in
cdiagError in Cholesky factorisation in cdiagERROR STOP from Node: 0ERROR
STOP from Node: 0
B.AouchenniPhD student
