I haven't tried the fortran extensions through pip.
Could you please try and install sisl the manual way?
Download the tar-ball and issue:
python setup.py install
2017-05-23 10:09 GMT+02:00 maryam jamaati <m.sjama...@gmail.com>:
> Dear Nick,
>
> thanks for your attention.
> I installed sisl via pip command. And it was successfully installed
> without any errors.
> Also i installed pre-requisite before installing sisl such as :
> setuptools, numpy (>=1.9), scipy, netcdf4-python.
>
> Best Regards,
>
> On Mon, May 22, 2017 at 5:44 PM, Nick Papior <nickpap...@gmail.com> wrote:
>
>> Could you tell us how you have installed sisl?
>>
>> Also, I think I made a mistake in the script, it should be:
>>
>> >>> script begin <<<
>> #!/usr/bin/env python
>> import sys
>> import sisl
>> # Read the electronic structure from the file
>> H = sisl.get_sile(sys.argv[1]).read_es()
>> H.write('output.nc')
>> >>> script end <<<
>>
>> 2017-05-21 7:26 GMT+02:00 maryam jamaati <m.sjama...@gmail.com>:
>>
>>> Dear siesta users,
>>>
>>> In order to convert from TSHS to nc we used this small script from (
>>> https://answers.launchpad.net/siesta/+question/435947):
>>>
>>> #!/usr/bin/env python
>>> import sys
>>> import sisl
>>> # Read the electronic structure from the file
>>> H = get_sile(sys.argv[1]).read_es()
>>> H.write('output.nc')
>>> »> script end «<
>>>
>>> and then call it by:
>>> python convert.py siesta.TSHS
>>>
>>>
>>>
>>> But after running the code, the below error appears:
>>> ValueError: failed to create intent(cache|hide)|optional array— must
>>> have defined dimensions but got (3,0,)
>>>
>>> I would be pleased if anyone could help me to solve this problem.
>>>
>>> Best Regards,
>>>
>>>
>>
>>
>> --
>> Kind regards Nick
>>
>
>
--
Kind regards Nick
