You have a mixed usage of FPPFLAGS_* and LDFLAGS. So in the end you don't have the include directories for NetCDF (or any of your other libraries) in your FPPFLAGS variable (since you do FPPFLAGS = ... which overwrites what you did).
Simply carefully go through your variables/flags and either append them directly to FPPFLAGS, or, be very consistent on your usage of FPPFLAGS_* variables. Den ons. 17. apr. 2019 kl. 22.01 skrev I. Camps <[email protected]>: > Hello, > > I am trying to compile siesta in a new box with the following > configuration: > OS: Debian 9.8 64bits > Compilers: Intel(R) Fortran Intel(R) 64 Compiler for applications running > on Intel(R) 64, Version 19.0.3.199 Build 20190206 > MPI: Intel(R) MPI Library for Linux* OS, Version 2019 Update 3 Build > 20190214 > > I am getting the following error message: > > > > > *netcdf_ncdf.f90(59): error #7002: Error in opening the compiled module > file. Check INCLUDE paths. [NETCDF] use > netcdf------^netcdf_ncdf.f90(95): error #8237: The character length in a > component declaration shall either be a colon, be an initialization > expression, or be a specification expression. [GRP]...* > > > > > > > > > > *netcdf_ncdf.f90(663): error #6404: This name does not have a type, and > must have an explicit type. [NF90_INQUIRE_DIMENSION] call > ncdf_err(nf90_inquire_dimension(this%id,i,name=key))------------------------^netcdf_ncdf.f90(2964): > catastrophic error: Too many errors, exitingcompilation aborted for > netcdf_ncdf.f90 (code > 1)/home/icamps/temp/SIESTA/siesta-4.1-b4/Src/ncdf/smeka/Makefile.compiler:141: > recipe for target 'netcdf_ncdf.o' failedmake[1]: *** [netcdf_ncdf.o] Error > 1make[1]: Leaving directory > '/home/icamps/temp/SIESTA/siesta-4.1-b4/tmp-orange/ncdf/obj'Makefile:317: > recipe for target 'libncdf.a' failedmake: *** [libncdf.a] Error 2* > > This is driving me crazy as I used the same steps to compile siesta in > other linux boxes (only changing the Intel compilers and MPI versions) > > The output from NetCDF and NetCDF-Fortran are: > > NetCDF: > This netCDF 4.4.1 has been built with the following features: > --cc -> mpiicc > --cflags -> -I/software/LIBS/netcdf-4.4.1/include -fPIC > -I/software/LIBS/hdf5-1.8.12/include -I/include > -I/software/LIBS/pnetcdf-1.11.0/include > --libs -> > --has-c++ -> no > --cxx -> > --has-c++4 -> no > --cxx4 -> > --fc -> > --fflags -> > --flibs -> > --has-f90 -> no > --has-f03 -> no > --has-dap -> yes > --has-nc2 -> yes > --has-nc4 -> yes > --has-hdf5 -> yes > --has-hdf4 -> no > --has-logging-> no > --has-pnetcdf-> yes > --has-szlib -> > --prefix -> /software/LIBS/netcdf-4.4.1 > --includedir-> /software/LIBS/netcdf-4.4.1/include > --version -> netCDF 4.4.1 > > NetCDF-Fortran: > This netCDF-Fortran 4.4.4 has been built with the following features: > --cc -> mpiicc > --cflags -> -I/software/LIBS/netcdf-fortran-4.4.4/include -fPIC > -DgFortran -I/software/LIBS/hdf5-1.8.12/include -I/include > -I/software/LIBS/netcdf-4.4.1/include > --fc -> mpiifort > --fflags -> -I/software/LIBS/netcdf-fortran-4.4.4/include > --flibs -> -L/software/LIBS/netcdf-fortran-4.4.4/lib -lnetcdff > -lnetcdf -L/lib -Wl,-rpath=/lib -L/software/LIBS/hdf5-1.8.12/lib > -Wl,-rpath=/software/LIBS/hdf5-1.8.12/lib -L/software/LIBS/netcdf-4.4.1/lib > -Wl,-rpath=/software/LIBS/netcdf-4.4.1/lib -lnetcdf -lhdf5hl_fortran > -lhdf5_fortran -lhdf5_hl -lhdf5 -lz > --has-f90 -> no > --has-f03 -> yes > --has-nc2 -> yes > --has-nc4 -> yes > --prefix -> /software/LIBS/netcdf-fortran-4.4.4 > --includedir-> /software/LIBS/netcdf-fortran-4.4.4/include > --version -> netCDF-Fortran 4.4.4 > > My arch.make file: > > > > > > > > > > > > > *SIESTA_ARCH=intel-mpi##FC=mpiifortFC_SERIAL=ifortCC=mpiiccCXX=mpicxxRANLIB=ranlibMKLPATH=/opt/intel/mkl/lib/intel64FFLAGS=-O1 > -ipo -xHost -ip -prec-div -prec-sqrt -qopt-prefetch -mkl=parallel > -I${MKLROOT}/includeFFLAGS_CHECKS=-g -O0 -debug full -traceback > -CFFLAGS_DEBUG= -gDUMMY_FOX=--enable-dummy* > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > *INCFLAGS += -I/software/LIBS/netcdf-4.4.1/includeLDFLAGS += > -L/software/LIBS/zlib-1.2.8/lib > -Wl,-rpath=/software/LIBS/zlib-1.2.8/libLDFLAGS += > -L/software/LIBS/hdf5-1.8.12/lib > -Wl,-rpath=/software/LIBS/hdf5-1.8.12/libLDFLAGS += > -L/software/LIBS/netcdf-4.4.1/lib > -Wl,-rpath=/software/LIBS/netcdf-4.4.1/libLIBS += -lnetcdff -lnetcdf > -lhdf5_hl -lhdf5 -lzCOMP_LIBS += libncdf.a libfdict.aFPPFLAGS += -DCDF > -DNCDF -DNCDF_4LDFLAGS += -static-intel > -L$(MKLPATH)#MPI_INTERFACE=libmpi_f90.aMPI_INCLUDE=/opt/intel/impi/2019.3.199/intel64/include > # Note . for no-opMPI_LIBS= -L/opt/intel/impi/2019.3.199/intel64/lib > -lmpi_90FPPFLAGS_MPI=-DMPIMETIS_LIB=/software/LIBS/parmetis-4.0.3/lib/libparmetis.aFPPFLAGS > += -DSIESTA__METIS# MUMPSLIBS += -L/software/LIBS/MUMPS-5.0.2/lib -lzmumps > -lmumps_commonFPPFLAGS += -DSIESTA__MUMPSMKLROOT=${MKLPATH}SUGGESTED_LIBS= > ${MKLROOT}/libmkl_blas95_lp64.a ${MKLROOT}/libmkl_lapack95_lp64.a > \ ${MKLROOT}/libmkl_scalapack_lp64.a \ > -Wl,--start-group \ ${MKLROOT}/libmkl_intel_lp64.a > \ ${MKLROOT}/libmkl_sequential.a \ > ${MKLROOT}/libmkl_core.a \ > ${MKLROOT}/libmkl_blacs_intelmpi_lp64.a \ -Wl,--end-group > \ -lm -ldlLIBS=$(SUGGESTED_LIBS) $(NETCDF_LIBS) $(COMP_LIBS) > $(METIS_LIB)#SYS=nagFPPFLAGS= $(FPPFLAGS_CDF) $(FPPFLAGS_MPI)INCFLAGS > +=$(NETCDF_INCFLAGS)#FFLAGS += $(INCFLAGS)#FFLAGS_DEBUG = -g -O1 # your > appropriate flags here...# The atom.f code is very vulnerable. Particularly > the Intel compiler# will make an erroneous compilation of atom.f with high > optimization# levels.atom.o: atom.F $(FC) -c $(FFLAGS_DEBUG) > $(INCFLAGS) $(FPPFLAGS) $(FPPFLAGS_fixed_F) $<* > > > > > > > > > > > *c.o: $(CC) -c $(CFLAGS) $(INCFLAGS) $(CPPFLAGS) $<.F.o: > $(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $<.f.o: $(FC) -c > $(FFLAGS) $(INCFLAGS) $<.F90.o: $(FC) -c $(FFLAGS) $(INCFLAGS) > $(FPPFLAGS) $<.f90.o: $(FC) -c $(FFLAGS) $(INCFLAGS) $(FPPFLAGS) $<* > []'s, > Camps > -- Kind regards Nick
