Question #688202 on Sikuli changed:
https://answers.launchpad.net/sikuli/+question/688202

    Status: Open => Needs information

Manfred Hampl requested more information:
If this occurs "after a few hours of running", then I assume that there is some 
kind of memory leak.
I suspect that some part of the program allocates memory and doesn't free it 
any more, and does this in a loop, consuming all available memory over the 
course of time.
(The culprit can be both the sikuli program and your script.)

Does the system still react in that status?
Can you execute
free -m
?

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