I found the cause.
My PC (not mine, my job workstation) has some security policies that forbid the 
user to write .sj files on external disks.
So, since I was running the sikuli IDE jar from my pen drive, it probably tried 
to save a temporary file there, failed for not having permissions, and the IDE 
did not treat the error.

Not sure if it's worth doing the correction. It is very specific and
should affect almost no one.

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https://bugs.launchpad.net/bugs/1872369

Title:
  IDE won't save source files on .sikuli folder

Status in Sikuli:
  New

Bug description:
  I'm running the IDE 2.0.3 on windows 10.
  Straight double clicking its .jar.

  At startup it says that neither Jython nor Jruby are installed, and I
  click OK to ignore it and use javascript only.

  Whenever I try to run my script for the first time, it asks me to save it. 
  If I choose as folder.sikuli, it appears it was saved, but no .js file is 
created on the folder. 
  Script name remains "untitled*", though.

  After that, I can click "save" multiple times. It appears to have worked, 
but, still, no javascript file is created on the folder.
  (Every image file included in the script is saved)

  I thought maybe it was saved somewhere else, but documentation
  (http://doc.sikuli.org/devs/system-design.html#the-structure-of-a
  -sikuli-source-executable-script-sikuli-skl) says the .sikuli folders
  will have all the images and the source code.

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