I gave up and did it the same command line way I have done it in the past.
http://www.mail-archive.com/[email protected]/msg16568.html
I didn't have to do the part about the CA cert. That had already worked 
through the GUI, so I guess I was all set there. I also didn't have to 
do the 'myhost.mydomain.keystore' part. That file wasn't created by the 
script when I ran it, and Sipx seems to be creating one on its own in 
/etc/sipxpbx/ssl/
I don't know why the GUI couldn't process the Microsoft cert. The 
command line method doesn't seem to have any trouble.

-Matthew

On 8/31/2010 5:28 PM, Matthew Kitchin (Public) wrote:
> Yes. I just got the root cert installed. That was my first challenge. I guess 
> if I could get some debug output or at least a logfile maybe I would have a 
> clue what the issue was.
> -----Original Message-----
> From: Tony Graziano<[email protected]>
> Date: Tue, 31 Aug 2010 18:14:10
> To:<[email protected]>;<[email protected]>
> Subject: Re: [sipx-users] Any luck importing certificate authority in 4.2.1?
>
> I seem to recall it might have something to do with a missing root
> certificate?
>
> If this is a self (internal CA), did you install the root certificate so it
> could verify the chain of authority?
>
> I ask because you can't import google contacts until you grab the root
> authority for verisign where googles cert is... Does this make sense?
>
> ============================
> Tony Graziano, Manager
> Telephone: 434.984.8430
> Fax: 434.984.8431
>
> Email: [email protected]
>
> LAN/Telephony/Security and Control Systems Helpdesk:
> Telephone: 434.984.8426
> Fax: 434.984.8427
>
> Helpdesk Contract Customers:
> http://www.myitdepartment.net/gethelp/
>
> ----- Original Message -----
> From: [email protected]
> <[email protected]>
> To: [email protected]<[email protected]>
> Sent: Tue Aug 31 18:06:12 2010
> Subject: Re: [sipx-users] Any luck importing certificate authority in 4.2.1?
>
>    I'm stuck on 'Unable to validate certificate' whenever I try and put
> in the actual cert for the server. Does anyone know exactly what format
> it is looking for? Nothing is updating in the logfiles indicating an issue.
>
> On 8/31/2010 4:54 PM, Matthew Kitchin (public/usenet) wrote:
>>   I think I am making progress. I decided to go check the development
>> list archive, and one of the most recent posts was this:
>> http://list.sipfoundry.org/archive/sipx-dev/msg24143.html
>> I renamed my cer file to a crt file, and I have the CA cert imported
>> now. Progress :)
>>
>> On 8/31/2010 10:56 AM, Matthew Kitchin (public/usenet) wrote:
>>>   I'm trying to install a cert from a internal CA. I have done it with
>>> a tedious command line based way in the past, because the GUI
>>> wouldn't allow what needed to be done. I read there were significant
>>> improvements in 4.2.x in this area.
>>> I generated the request and have the response file from my CA. It
>>> appears to die because it can't verify the cert. Makes sense, so I
>>> try to install the CA certificate. I tried all 3 formats I could get
>>> it in: DER, Base-64, and PKCS. Base-64 is the one that at least
>>> imports and displays on the screen, so that seems to be what I need
>>> here. That is as far as I can make it though. The cert details are
>>> displayed on the screen, and I click the 'Keep' button. I get the
>>> note saying a background job failed, and I see this when I click on it:
>>> File replication: nshpwis06-64.cer 8/31/10 10:50 AM 8/31/10 10:50 AM
>>> Failed
>>>
>>> sipxconfig.log seems to have the relevant log entries (below).
>>>
>>> I see several other posts
>>> http://list.sipfoundry.org/archive/sipx-dev/msg12579.html
>>> related to "not declared as a resource by any sipXecs process"
>>> Any ideas?
>>>
>>> Thanks,
>>> Matthew
>>>
>>>
>>> "2010-08-31T15:50:50.119000Z":3:JAVA:INFO:local:P1-19:00000000:SipxReplicationContextImpl:"Start
>>> replication: File replication: nshpwis06-64.cer"
>>> "2010-08-31T15:50:50.201000Z":4:JAVA:INFO:local:P1-19:00000000:XmlRpcClientInterceptor:"XML/RPC
>>> File.replace with [pbx.tn203.sipx.voip, /etc/sipxpbx/ssl/autho...,
>>> 420, LS0tLS1CRUdJTiBDRVJUSU...] on
>>> https://pbx.tn203.sipx.voip:8092/RPC2";
>>> "2010-08-31T15:50:50.452000Z":5:JAVA:ERR:local:pool-3-thread-1:00000000:XmlRpcClientInterceptor:"XML/RPC
>>> error: "
>>> org.apache.xmlrpc.XmlRpcException: File
>>> '/etc/sipxpbx/ssl/authorities/nshpwis06-64.cer' not declared as a
>>> resource by any sipXecs process
>>>          at
>>> org.apache.xmlrpc.XmlRpcClientResponseProcessor.decodeException(XmlRpcClientResponseProcessor.java:102)
>>>          at
>>> org.apache.xmlrpc.XmlRpcClientResponseProcessor.decodeResponse(XmlRpcClientResponseProcessor.java:69)
>>>          at
>>> org.apache.xmlrpc.XmlRpcClientWorker.execute(XmlRpcClientWorker.java:72)
>>>          at org.apache.xmlrpc.XmlRpcClient.execute(XmlRpcClient.java:193)
>>>          at org.apache.xmlrpc.XmlRpcClient.execute(XmlRpcClient.java:184)
>>>          at
>>> org.sipfoundry.sipxconfig.xmlrpc.XmlRpcClientInterceptor$1.call(Unknown
>>> Source)
>>>          at
>>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>>>          at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
>>>          at java.lang.Thread.run(Thread.java:619)
>>> "2010-08-31T15:50:50.456000Z":6:JAVA:ERR:local:P1-19:00000000:XmlRpcClientInterceptor:"Runtime
>>> error in XML/RPC call"
>>> org.sipfoundry.sipxconfig.xmlrpc.XmlRpcRemoteException: File
>>> '/etc/sipxpbx/ssl/authorities/nshpwis06-64.cer' not declared as a
>>> resource by any sipXecs process
>>>          at
>>> org.sipfoundry.sipxconfig.xmlrpc.XmlRpcClientInterceptor$1.call(Unknown
>>> Source)
>>>          at
>>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>>>          at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
>>>          at java.lang.Thread.run(Thread.java:619)
>>> "2010-08-31T15:50:50.465000Z":7:JAVA:ERR:local:P1-19:00000000:ReplicationManagerImpl:"File
>>> replication failed: nshpwis06-64.cer"
>>> org.sipfoundry.sipxconfig.xmlrpc.XmlRpcRemoteException: File
>>> '/etc/sipxpbx/ssl/authorities/nshpwis06-64.cer' not declared as a
>>> resource by any sipXecs process
>>>          at
>>> org.sipfoundry.sipxconfig.xmlrpc.XmlRpcClientInterceptor$1.call(Unknown
>>> Source)
>>>          at
>>> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>>>          at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
>>>          at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
>>>          at java.lang.Thread.run(Thread.java:619)
>>> "2010-08-31T15:50:50.466000Z":8:JAVA:WARNING:local:P1-19:00000000:SipxReplicationContextImpl:"Replication
>>> failed: File replication: nshpwis06-64.cer"
>>>
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