For batch jobs, a job_submit plugin will work.
http://slurm.schedmd.com/job_submit_plugins.html

Quoting Yair Yarom <[email protected]>:

Hi,

Is there any way to change the working directory using a prolog script
or through a spank plugin (or by any other means)? I need something that
runs during the submission phase, not on the remote side. Basically I
want to set the "-D" option if it's not set by the user.

Thanks,
    Yair.

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