I think what we are saying is that HDF5 appears to be violating the MPI standard - they are not supposed to be directly including the mpio.h header. Someone might want to discuss that with them :-)
> On Sep 12, 2015, at 8:13 PM, Christopher Samuel <[email protected]> wrote: > > > On 12/09/15 18:56, dani wrote: > >> You shouldn't need openmpi preinstalled with recent slurm. >> Slurm build pmi2, and then when building openmpi you supply --with-pmi >> and point it to the pmi dir created by slurm > > But Michael appears to want HDF5 support in Slurm and it is that HDF5 > code that seems to need these MPI headers. > > All the best, > Chris (finally in DC for the Slurm User Group) > -- > Christopher Samuel Senior Systems Administrator > VLSCI - Victorian Life Sciences Computation Initiative > Email: [email protected] Phone: +61 (0)3 903 55545 > http://www.vlsci.org.au/ http://twitter.com/vlsci
