Hi Suprita, You request 50 MB per CPU and one task, but the node definition in slurm.conf does not contain the attribute "RealMemory". The default value is 1 MB, so Slurm cannot find a node which satisfies your request.
Cheers, Loris <[email protected]> writes: > Hi > > I am submitting job using sbatch command. > > And my script is as follows: > > #!/bin/sh > > source /etc/profile > > source $HOME/.bashrc > > #SBATCH --job-name=222e > > #SBATCH --output=slurm-%j.out > > #SBATCH --error=slurm-%j.err > > #SBATCH --ntasks=1 > > #SBATCH --mem-per-cpu=50 > > #SBATCH --account=dhvani > > #SBATCH [email protected] > > #SBATCH --mail-type=ALL > > cd /home1/dhvani/namd_input/; > > MACHINE_FILE=/home1/dhvani/namd_input//machinefile > > /opt/slurm/bin/scontrol show hostname $SLURM_JOB_NODELIST &> $MACHINE_FILE > > /opt/pkgs/NAMD_2.9_Linux-x86_64-multicore/namd2 > /home1/dhvani/namd_input/apoa1.namd > 22323 > > But it is giving error: Requested node configuration is not available.(due to > memory option) > > I am attaching the slurm.conf file too. > > Kindly help. > > Regards > > Suprita > > The information contained in this electronic message and any attachments to > this > message are intended for the exclusive use of the addressee(s) and may contain > proprietary, confidential or privileged information. If you are not the > intended > recipient, you should not disseminate, distribute or copy this e-mail. Please > notify the sender immediately and destroy all copies of this message and any > attachments. WARNING: Computer viruses can be transmitted via email. The > recipient should check this email and any attachments for the presence of > viruses. The company accepts no liability for any damage caused by any virus > transmitted by this email. www.wipro.com > > # > # Example slurm.conf file. Please run configurator.html > # (in doc/html) to build a configuration file customized > # for your environment. > # > # > # slurm.conf file generated by configurator.html. > # > # See the slurm.conf man page for more information. > # > ClusterName=testcluster > ControlMachine=testmaster > ControlAddr=192.168.122.161 > #BackupController= > #BackupAddr= > # > SlurmUser=root > SlurmdUser=root > SlurmctldPort=6817 > SlurmdPort=6818 > AuthType=auth/munge > #JobCredentialPrivateKey= > #JobCredentialPublicCertificate= > StateSaveLocation=/tmp > SlurmdSpoolDir=/tmp/slurmd > SwitchType=switch/none > MpiDefault=none > SlurmctldPidFile=/var/run/slurmctld.pid > SlurmdPidFile=/var/run/slurmd.pid > ProctrackType=proctrack/pgid > #PluginDir= > CacheGroups=0 > #FirstJobId= > ReturnToService=1 > #MaxJobCount= > #PlugStackConfig= > #PropagatePrioProcess= > #PropagateResourceLimits= > #PropagateResourceLimitsExcept= > #Prolog= > #Epilog= > #SrunProlog= > #SrunEpilog= > #TaskProlog= > #TaskEpilog= > TaskPlugin=task/none > #TrackWCKey=no > #TreeWidth=50 > #TmpFS= > #UsePAM= > # > # TIMERS > SlurmctldTimeout=300 > SlurmdTimeout=300 > InactiveLimit=0 > MinJobAge=300 > KillWait=30 > Waittime=0 > # > # SCHEDULING > SchedulerType=sched/backfill > #SchedulerAuth= > SchedulerPort=7321 > #SchedulerRootFilter= > SelectType=select/cons_res > #DefMemPerCPU=100 > FastSchedule=1 > #PriorityType=priority/multifactor > #PriorityDecayHalfLife=14-0 > #PriorityUsageResetPeriod=14-0 > #PriorityWeightFairshare=100000 > #PriorityWeightAge=1000 > #PriorityWeightPartition=10000 > #PriorityWeightJobSize=1000 > #PriorityMaxAge=1-0 > # > # LOGGING > SlurmctldDebug=7 > SlurmctldLogFile=/var/log/slurmctld.log > SlurmdDebug=7 > SlurmdLogFile=/var/log/slurmd.log > JobCompType=jobcomp/mysql > JobCompLoc=slurm_acct_db > JobCompHost=testmaster > # > # ACCOUNTING > #JobAcctGatherType=jobacct_gather/linux > #JobAcctGatherFrequency=30 > # > AccountingStorageType=accounting_storage/mysql > AccountingStorageHost=testmaster > #AccountingStorageLoc= > AccountingStorageEnforce=associations > #AccountingStoragePass= > #AccountingStorageUser= > # > # COMPUTE NODES > NodeName=testmaster,testclient CPUs=2 State=UNKNOWN > PartitionName=debug Nodes=testmaster,testclient Default=YES MaxTime=INFINITE > State=UP -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
