Thanks! That was the problem - I misunderstood from my NICD colleagues what the machine config is and it has only a single CPU:
[root@bio-linux rpmbuild]# lscpu Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 4 On-line CPU(s) list: 0-3 Thread(s) per core: 1 Core(s) per socket: 4 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 60 Model name: Intel(R) Xeon(R) CPU E3-1220 v3 @ 3.10GHz Stepping: 3 CPU MHz: 1064.000 CPU max MHz: 3100.0000 CPU min MHz: 1064.0000 BogoMIPS: 6185.17 Virtualization: VT-x L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 8192K NUMA node0 CPU(s): 0-3 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf eagerfpu pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm ida arat epb pln pts dtherm tpr_shadow vnmi flexpriority ept vpid fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid xsaveopt On Sat, 5 Nov 2016 at 08:51 Chris Samuel <[email protected]> wrote: > > On Friday, 4 November 2016 11:39:30 PM AEDT Peter van Heusden wrote: > > > Nov 5 02:12:09 bio-linux slurmctld[27239]: error: Node localhost has > low socket*core*thread count (4 < 8) > > Nov 5 02:12:09 bio-linux slurmctld[27239]: error: Node localhost has > low cpu count (4 < 8) > > So Slurm is detecting that your Slurm config of "Sockets=2 > CoresPerSocket=4" > is not matched by what it is detecting on the node. > > What does "lscpu" say please? > > -- > Christopher Samuel Senior Systems Administrator > VLSCI - Victorian Life Sciences Computation Initiative > Email: [email protected] Phone: +61 (0)3 903 55545 > http://www.vlsci.org.au/ http://twitter.com/vlsci >
