Maybe too obvious, but have you checked your .bashrc, .bash_profile and
such?
Brian Andrus
On 5/12/2020 10:27 AM, Ellestad, Erik wrote:
Which SLURM prolog specifically?
I’m not finding that to work for me in either task-prolog or prolog.
SLURM_TMPDIR and TMPDIR are still both set to /tmp when I run a job.
Erik
--
Erik Ellestad
Wynton Cluster SysAdmin
UCSF
*From:* slurm-users <slurm-users-boun...@lists.schedmd.com> *On Behalf
Of *Roger Moye
*Sent:* Tuesday, May 12, 2020 9:12 AM
*To:* Slurm User Community List <slurm-users@lists.schedmd.com>
*Subject:* Re: [slurm-users] Reset TMPDIR for All Jobs
We had issues getting TMPDIR to work as well. We finally did this in
our prolog:
export SLURM_TMPDIR="/tmp/slurm/${SLURM_JOB_ID}"
This works.
-Roger
*From:* slurm-users <slurm-users-boun...@lists.schedmd.com
<mailto:slurm-users-boun...@lists.schedmd.com>> *On Behalf Of
*Ellestad, Erik
*Sent:* Tuesday, May 12, 2020 10:40 AM
*To:* slurm-users@lists.schedmd.com <mailto:slurm-users@lists.schedmd.com>
*Subject:* [slurm-users] Reset TMPDIR for All Jobs
I was wanted to set TMPDIR from /tmp to a per job directory I create
in local /scratch/$SLURM_JOB_ID (for example)
This bug suggests I should be able to do this in a task-prolog.
https://bugs.schedmd.com/show_bug.cgi?id=2664
<https://urldefense.proofpoint.com/v2/url?u=https-3A__bugs.schedmd.com_show-5Fbug.cgi-3Fid-3D2664&d=DwMFAg&c=iORugZls2LlYyCAZRB3XLg&r=Ct3zEADMmPgyUYfpHDJQWaWsE9mNbEHEhGxpsYoThbE&m=xPdUh7dM0hithU9gkyVB8sI8GVpqet6rKWAGEAyuPa4&s=6Zv-scnpqWg7bREwPfLGi8FJE8BOCCurK4pMiw91P84&e=>
However adding the following to task-prolog doesn’t seem to affect the
variables the job script is running with.
unset TMPDIR
export TMPDIR=/scratch/$SLURM_JOB_ID
It does work if it is done in the job script, rather than the task-prolog.
Am I missing something?
Erik
--
Erik Ellestad
Wynton Cluster SysAdmin
UCSF
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