Several questions. Pardon me if they're obvious, but I've spent faaaar too much of my life overlooking the obvious...
1> Is it possible you're running out of disk? 40-50G could suck up a lot of disk, especially when merging. You may need that much again free when a merge occurs. 2> speaking of merging, what are your merge settings? How are you triggering merges. See <mergeFactor> and associated in solrconfig.xml? 3> You might get some insight by removing the Solr indexing part, can you spin through your parsing from beginning to end? That would eliminate your questions about whether you're XML parsing is the problem. 40-50G is a large index, but it's certainly within Solr's capability, so you're not hitting any built-in limits. My first guess would be that you're running out of disk, at least that's the first thing I'd check next... Best Erick On Tue, Nov 16, 2010 at 3:33 AM, Erik Fäßler <erik.faess...@uni-jena.de>wrote: > Hey all, > > I'm trying to create a Solr index for the 2010 Medline-baseline ( > www.pubmed.gov, over 18 million XML documents). My goal is to be able to > retrieve single XML documents by their ID. Each document comes with a unique > ID, the PubMedID. So my schema (important portions) looks like this: > > <field name="pmid" type="string" indexed="true" stored="true" > required="true" /> > <field name="date" type="tdate" indexed="true" stored="true"/> > <field name="xml" type="text" indexed="true" stored="true"/> > > <uniqueKey>pmid</uniqueKey> > <defaultSearchField>pmid</defaultSearchField> > > pmid holds the ID, data hold the creation date; xml holds the whole XML > document (mostly below 5kb). I used the DataImporter to do this. I had to > write some classes (DataSource, EntityProcessor, DateFormatter) myself, so > theoretically, the error could lie there. > > What happens is that indexing just looks fine at the beginning. Memory > usage is quite below the maximum (max of 20g, usage of below 5g, most of the > time around 3g). It goes several hours in this manner until it suddenly > stopps. I tried this a few times with minor tweaks, non of which made any > difference. The last time such a crash occurred, over 16.5 million documents > already had been indexed (argh, so close...). It never stops at the same > document and trying to index the documents, where the error occurred, just > runs fine. Index size on disc was between 40g and 50g the last time I had a > look. > > This is the log from beginning to end: > > (I decided to just attach the log for the sake of readability ;) ). > > As you can see, Solr's error message is not quite complete. There are no > closing brackets. The document is cut in half on this message and not even > the error message itself is complete: The 'D' of > (D)ataImporter.runCmd(DataImporter.java:389) right after the document text > is missing. > > I have one thought concerning this: I get the input documents as an > InputStream which I read buffer-wise (at most 1000bytes per read() call). I > need to deliver the documents in one large byte-Array to the XML parser I > use (VTD XML). > But I don't only get the individual small XML documents but always one > larger XML blob with exactly 30,000 of these documents. I use a self-written > EntityProcessor to extract the single documents from the larger blob. These > blobs have a size of about 50 to 150mb. So what I do is to read these large > blobs in 1000bytes steps and store each byte array in an ArrayList<byte[]>. > Afterwards, I create the ultimate byte[] and do System.arraycopy from the > ArrayList into the byte[]. > I tested this and it looks fine to me. And how I said, indexing the > documents where the error occurred just works fine (that is, indexing the > whole blob containing the single document). I just mention this because it > kind of looks like there is this cut in the document and the missing 'D' > reminds me of char-encoding errors. But I don't know for real, opening the > error log in vi doesn't show any broken characters (the last time I had such > problems, vi could identify the characters in question, other editors just > wouldn't show them). > > Further ideas from my side: Is the index too big? I think I read something > about a large index would be something around 10million documents, I aim to > approximately double this number. But would this cause such an error? In the > end: What exactly IS the error? > > Sorry for the lot of text, just trying to describe the problem as detailed > as possible. Thanks a lot for reading and I appreciate any ideas! :) > > Best regards, > > Erik >
