I guess the 1.1 sb_imapfilter is part of the "CVS" version? (I've no idea what that means, but will make the time to research it out.)
BTW, the 1.1 sb_imapfilter does much less of this - good mail should
never need to be duplicated at all.
1. You said that one batch did work properly, so it's possible (though unlikely) that the output was for that session. You could change your batch file to include -i4 (but without the redirect) and watch it do it's work. Each time there is an APPEND there should be the two STORE lines as in the above (one asking for the STORE and one confirming that it was done). If it all appears as it should, then maybe we should try STORE'ing flags for a message manually, and seeing if that works.
2. You could give the CVS version of sb_imapfilter a go. It is improved in many ways, although it obviously hasn't been tested by as many people. It's possible that it fixes this problem, although it wouldn't be deliberately since I haven't seen this before. If you do decide to do that, then you get to get a copy of the whole spambayes package (as described on sourceforge: http://sf.net/projects/spambayes) and then run "setup.py install --force" (if you ran "setup.py install" previously).
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