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• [spctools-discuss] Installing TPP in Windows Virtual Machine Maram El-Azouni
  • Re: [spctools-discuss] Installing TPP in Windows Virtual Machine 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] Installing TPP in Windows Virtual Machine Maram El-Azouni
• [spctools-discuss] Petunia not working Duong Trinh
• [spctools-discuss] missing Duong Trinh
• [spctools-discuss] TPP 7.3.0 Release is now available 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Issue with Viewing ProtXML File After StPeter Quantification" Thakorn
• [spctools-discuss] Very low number of identifications Comet+PeptideProphet Valeriia Vasylieva
  • Re: [spctools-discuss] Very low number of identifications Comet+PeptideProphet Jimmy Eng
  • Re: [spctools-discuss] Very low number of identifications Comet+PeptideProphet Valeriia Vasylieva
  • Re: [spctools-discuss] Very low number of identifications Comet+PeptideProphet Jimmy Eng
• [spctools-discuss] decoy proteins issue kusal bellana
  • Re: [spctools-discuss] Decoy Proteins Issue Jimmy Eng
• [spctools-discuss] Regarding generation of relative abundance at peptide level 'ARPITA TIWARI' via spctools-discuss
• [spctools-discuss] MSFragger with Scaffold on the command line Eric Kischell
  • Re: [spctools-discuss] MSFragger with Scaffold on the command line Jimmy Eng
• [spctools-discuss] spscore in iprophet Priti Panchal
• Re: [spctools-discuss] Regarding the error at conversion of .raw file to mzML files Robert Winkler
  • Re: [spctools-discuss] Regarding the error at conversion of .raw file to mzML files 'ARPITA TIWARI' via spctools-discuss
  • Re: [spctools-discuss] Regarding the error at conversion of .raw file to mzML files Sebastian Paez
  • Re: [spctools-discuss] Regarding the error at conversion of .raw file to mzML files 'ARPITA TIWARI' via spctools-discuss
• [spctools-discuss] TPP 7.2.0 - Release is now available 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Comet parameters for variable modification Nachiket W
  • [spctools-discuss] Re: Comet parameters for variable modification Jimmy Eng
  • Re: [spctools-discuss] Re: Comet parameters for variable modification Nachiket W
• [spctools-discuss] Proteome Discoverer using AMD Ryzen processors Al
• [spctools-discuss] How to use TPP on M1 Mac OS 'Ash Pillay-Muneef' via spctools-discuss
• [spctools-discuss] Need help with using TPP on Mac OS M1 'Ash Pillay-Muneef' via spctools-discuss
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 'Ash Pillay-Muneef' via spctools-discuss
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 'Ash Pillay-Muneef' via spctools-discuss
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 David Shteynberg
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 David Shteynberg
  • Re: [spctools-discuss] Need help with using TPP on Mac OS M1 'Ash Pillay-Muneef' via spctools-discuss
• Re: [spctools-discuss] Error in Storedpeptides Jimmy Eng
• [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP David Shteynberg
  • Re: [spctools-discuss] Process PEAKS pepxml in TPP Sergio Ciordia
• [spctools-discuss] Linking Biotools with Mascot using own Database Sanclayver Araújo
• [spctools-discuss] Recieving this Error Found! UNK_ACTION(Select ): A fatal error has been encountered. Aarthie Senathirajah
  • Re: [spctools-discuss] Recieving this Error Found! UNK_ACTION(Select ): A fatal error has been encountered. 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] could not open database file "/dbase/IPI/ipi.HUMAN.fasta.v2.31" (No such file or directory) Zifu Zhao
• Re: [spctools-discuss] unable to get similar results in TPP 7.1 and earlier versions David Shteynberg
  • Re: [spctools-discuss] unable to get similar results in TPP 7.1 and earlier versions reeju
• Re: [spctools-discuss] unable to run kojak 'AANCHAL JALANI' via spctools-discuss
• [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode Shagun Gupta
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode Shagun Gupta
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode Shagun Gupta
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode David Shteynberg
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode Shagun Gupta
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issues with processing .d (Bruker) files run in DDA-LFQ mode sudarshan kumar
• Re: [spctools-discuss] converting prot.xml to tsv file error David Shteynberg
  • Re: [spctools-discuss] converting prot.xml to tsv file error Karla Joanna Rojas Mendez
  • Re: [spctools-discuss] converting prot.xml to tsv file error Karla Joanna Rojas Mendez
  • Re: [spctools-discuss] converting prot.xml to tsv file error 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] converting prot.xml to tsv file error Karla Joanna Rojas Mendez
• [spctools-discuss] Can anyone share notepad version of comet.param version 2024 sudarshan kumar
  • Re: [spctools-discuss] Can anyone share notepad version of comet.param version 2024 sudarshan kumar
  • Re: [spctools-discuss] Can anyone share notepad version of comet.param version 2024 David Shteynberg
  • Re: [spctools-discuss] Can anyone share notepad version of comet.param version 2024 David Shteynberg
  • Re: [spctools-discuss] Can anyone share notepad version of comet.param version 2024 David Shteynberg
• [spctools-discuss] SWATH analysis dr.gunj...@gmail.com
  • Re: [spctools-discuss] SWATH analysis David Shteynberg
• [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability David Shteynberg
  • Re: [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Peptide prophet showing all zero probability David Shteynberg
  • Re: [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability sudarshan kumar
  • Re: [spctools-discuss] Peptide prophet showing all zero probability 'David Shteynberg' via spctools-discuss
• [spctools-discuss] David Shteynberg
• [spctools-discuss] TPP v7.1.0 Albedo - Works on Bookworm (Deb 12)! - Comment on Docs Robert Winkler
  • Re: [spctools-discuss] TPP v7.1.0 Albedo - Works on Bookworm (Deb 12)! - Comment on Docs 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Compilation on FreeBSD 14: Unable to determine target platform 😉 Robert Winkler
  • Re: [spctools-discuss] Compilation on FreeBSD 14: Unable to determine target platform 😉 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] Compilation on FreeBSD 14: Unable to determine target platform 😉 Robert Winkler
  • Re: [spctools-discuss] Compilation on FreeBSD 14: Unable to determine target platform 😉 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 David Shteynberg
  • Re: [spctools-discuss] Issue with Kojak searching of TPP v7.0.0 Zeyu Wang
• Re: [spctools-discuss] Seeking help regarding peptide prophet and decoy mode Debojyoti Pal
  • Re: [spctools-discuss] Seeking help regarding peptide prophet and decoy mode Debojyoti Pal
  • Re: [spctools-discuss] Seeking help regarding peptide prophet and decoy mode 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Running MSfragger search in TPP 7.0 Zeyu Wang
  • Re: [spctools-discuss] Running MSfragger search in TPP 7.0 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Running MSfragger search in TPP 7.0 Zeyu Wang
• [spctools-discuss] Considering including code from TPP Libra into Crux. Pitfalls and file format issues? Charles E Grant
• [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to David Shteynberg
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to Robert Willows
  • Re: [spctools-discuss] TPP 7.0 login screen appears for http://localhost:10401/tpp/cgi-bin/tpp_gui.pl but goes then goes "This site can’t be reached" to 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Issue with MSConvert of TPP v7.0.0. Nachiket W
  • Re: [spctools-discuss] Issue with MSConvert of TPP v7.0.0. 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with MSConvert of TPP v7.0.0. 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Issue with MSConvert of TPP v7.0.0. Nachiket W
• [spctools-discuss] TPP 7.0.0 Release is now available 'David Shteynberg' via spctools-discuss
  • [spctools-discuss] Re: TPP 7.0.0 Release is now available 'Juergen Bartel' via spctools-discuss
  • Re: [spctools-discuss] Re: TPP 7.0.0 Release is now available 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] TPP 7.0.0 Release is now available David Shteynberg
  • Re: [spctools-discuss] TPP 7.0.0 Release is now available 'Juergen Bartel' via spctools-discuss
• [spctools-discuss] StPeter nanogram calculation error Farshad AbdollahNia
  • [spctools-discuss] Re: StPeter nanogram calculation error mhoo...@systemsbiology.org
• [spctools-discuss] PepXML > spectrum > top hits viewer issue - Comet Sam Whedon
  • Re: [spctools-discuss] PepXML > spectrum > top hits viewer issue - Comet 'Luis Mendoza' via spctools-discuss
  • Re: [spctools-discuss] PepXML > spectrum > top hits viewer issue - Comet Jimmy Eng
  • Re: [spctools-discuss] PepXML > spectrum > top hits viewer issue - Comet Sam Whedon
• [spctools-discuss] PepXML Schema v1.23 Max Brazhnikov
  • Re: [spctools-discuss] PepXML Schema v1.23 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Bug Discovery in decoyFastaGenerator.pl 'David Shteynberg' via spctools-discuss
• [spctools-discuss] Xpress-related Discrepancy between pepXML and XPressPeptideUpdateParser. 2kl...@gmail.com
• [spctools-discuss] How to assess quality of assembly of unmapped reads ? Tuan Anh Nguyen Van
  • RE: [spctools-discuss] How to assess quality of assembly of unmapped reads ? 'Eric Deutsch' via spctools-discuss
• [spctools-discuss] Lib2HTML truncates peptide sequences after modification 'Juergen Bartel' via spctools-discuss
  • [spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification 'Juergen Bartel' via spctools-discuss
  • Re: [spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Re: Lib2HTML truncates peptide sequences after modification 'Juergen Bartel' via spctools-discuss
  • Re: [spctools-discuss] Lib2HTML truncates peptide sequences after modification David Shteynberg
• [spctools-discuss] TPP installation tutorials 404 errors? Will Comstock
  • Re: [spctools-discuss] TPP installation tutorials 404 errors? Will Comstock
  • Re: [spctools-discuss] TPP installation tutorials 404 errors? 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert Alex Gao
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert David Shteynberg
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert Alex Gao
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert David Shteynberg
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert Alex Gao
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert David Shteynberg
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert Alex Gao
  • Re: [spctools-discuss] Trouble converting Waters.RAW with TPP msconvert 'Luis Mendoza' via spctools-discuss
• [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
  • [spctools-discuss] Re: Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing David Shteynberg
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing David Shteynberg
  • Re: [spctools-discuss] Hi I cannot access the gui anymore is there something I'm missing Aarthie Senathirajah
• Re: [spctools-discuss] running ASAPratio for SILAC data David Shteynberg
  • Re: [spctools-discuss] running ASAPratio for SILAC data sudarshan kumar
  • Re: [spctools-discuss] running ASAPratio for SILAC data sudarshan kumar
  • Re: [spctools-discuss] running ASAPratio for SILAC data sudarshan kumar
  • Re: [spctools-discuss] running ASAPratio for SILAC data sudarshan kumar
  • Re: [spctools-discuss] running ASAPratio for SILAC data 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] running ASAPratio for SILAC data sudarshan kumar
  • Re: [spctools-discuss] running ASAPratio for SILAC data 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] running ASAPratio for SILAC data 'David Shteynberg' via spctools-discuss
• [spctools-discuss] sud silac asapratio sudarshan kumar
  • Re: [spctools-discuss] sud silac asapratio 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] sud silac asapratio sudarshan kumar
• [spctools-discuss] EXpress in SILAC sudarshan kumar
  • [spctools-discuss] Re: EXpress in SILAC Jimmy Eng
  • Re: [spctools-discuss] Re: EXpress in SILAC sudarshan kumar
  • Re: [spctools-discuss] Re: EXpress in SILAC sudarshan kumar
  • Re: [spctools-discuss] Re: EXpress in SILAC Jimmy Eng
• [spctools-discuss] Assistance Needed with Warning Messages in PTMProphet for TPP 6.3.3 PTM Localization Longping Fu
  • Re: [spctools-discuss] Assistance Needed with Warning Messages in PTMProphet for TPP 6.3.3 PTM Localization 'David Shteynberg' via spctools-discuss
  • Re: [spctools-discuss] Assistance Needed with Warning Messages in PTMProphet for TPP 6.3.3 PTM Localization Longping Fu
  • Re: [spctools-discuss] Assistance Needed with Warning Messages in PTMProphet for TPP 6.3.3 PTM Localization David Shteynberg
  • Re: [spctools-discuss] Assistance Needed with Warning Messages in PTMProphet for TPP 6.3.3 PTM Localization Longping Fu
• [spctools-discuss] I need help with silac search using a a combined file from xtandem and comet sudarshan kumar
  • [spctools-discuss] Re: I need help with silac search using a a combined file from xtandem and comet sudarshan kumar
• [spctools-discuss] XPRESS peak intensity value Iryna Abramchuk
  • Re: [spctools-discuss] XPRESS peak intensity value Jimmy Eng

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