Ok. Thanks for the help. I'll let you know what I find during the analyses. -Rebekah
On Jan 29, 1:42 pm, Luis Mendoza <[email protected]> wrote: > Hello Rebekah, > I have not heard of anyone using Libra on TMT data, but it should be able to > handle it. > > You will first need to generate a Libra condition file, where you specify > some options as well as isotopic contributions to each channel. (more info > here: http://tools.proteomecenter.org/wiki/index.php?title=Software:Libra > and > here:http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteom...). > I am not familiar with the Sorcerer interface, but recent releases of > the TPP GUI have a screen where you can generate this file (under Utilities > -> Libra Conditions). The interface has a drop-down that will pre-populate > the channel masses, though you will nee to enter the isotopic contributions > to neighboring channels (or leave them at zero). > > The condition file is the only other input required for Libra, so just > specify it by name in the interface, and you should be good to go. > > Hope this helps. Let us know if you have any other questions, and please > report back on your TMT experience with Libra. We would like to get a hold > of the "standard" isotopic contribution factors so that we can include them > as defaults in the GUI. > --Luis > > On Thu, Jan 29, 2009 at 5:45 AM, Ruby <[email protected]> wrote: > > > Has anyone ever used Libra to analyze TandemMassTag (TMT) data > > acquired on an Orbitrap? I'm using the TPP via the SageN/Sorcerer > > interface, and would love it if someone could tell me what the command > > line would be appropriate for the "Xinteract options". > > > Thanks! > > Rebekah --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
