Hey, I've never encountered this before but when i try to run xinteract, peptideprophet hangs during the initializing stats step. i tried fooling around with the settings with no avail. i tried omitting the - Od, adding -l1, and -p0. Any ideas what could be happening here?
Thanks! here's the output: $ /opt/tpp/`uname -p`/bin/xinteract -Ninteract.xml -Old -dREV *.xml /opt/tpp/x86_64/bin/xinteract (TPP v4.1 JETSTREAM rev 1, Build 200812051718 (linux)) running: "/opt/tpp/x86_64/bin/InteractParser 'interact.xml' 'CGB-001-289U.pep.xml' 'CGB-001-289V.pep.xml' 'CGB-001-289W.pep.xml' 'CGB-001-289Y.pep.xml' 'CGB-001-289Z.pep.xml' 'CGB-001-299A.pep.xml' 'CGB-001-299B.pep.xml' 'CGB-001-299C.pep.xml' 'CGB-001-299D.pep.xml' 'CGB-001-299E.pep.xml' 'CGB-001-299F.pep.xml' 'CGB-001-299U.pep.xml' 'CGB-001-299V.pep.xml' 'CGB-001-299W.pep.xml' 'CGB-001-299X.pep.xml' 'CGB-001-299Y.pep.xml' 'CGB-001-299Z.pep.xml' 'CGB-001-300A.pep.xml' 'CGB-001-300B.pep.xml' 'CGB-001-300C.pep.xml' 'CGB-001-300D.pep.xml' 'CGB-001-300E.pep.xml' 'CGB-001-300F.pep.xml' 'CGB-001-300U.pep.xml' 'CGB-001-300V.pep.xml' 'CGB-001-300W.pep.xml' 'CGB-001-300X.pep.xml' 'CGB-001-300Y.pep.xml' 'CGB-001-301A.pep.xml' 'CGB-001-301B.pep.xml' 'CGB-001-301C.pep.xml' 'CGB-001-301D.pep.xml' 'CGB-001-301E.pep.xml' 'CGB-001-301F.pep.xml' 'CGB-001-301U.pep.xml' 'CGB-001-301V.pep.xml' 'CGB-001-301W.pep.xml' 'CGB-001-301X.pep.xml' 'CGB-001-301Y.pep.xml' 'CGB-001-301Z.pep.xml' 'CGB-002-297A.pep.xml' 'CGB-002-297B.pep.xml' 'CGB-002-297C.pep.xml' 'CGB-002-297D.pep.xml' 'CGB-002-297E.pep.xml' 'CGB-002-297F.pep.xml' 'CGB-002-297U.pep.xml' 'CGB-002-297V.pep.xml' 'CGB-002-297W.pep.xml' 'CGB-002-297X.pep.xml' 'CGB-002-297Y.pep.xml' 'CGB-002-297Z.pep.xml' 'CGB-002-298A.pep.xml' 'CGB-002-298B.pep.xml' 'CGB-002-298C.pep.xml' 'CGB-002-298D.pep.xml' 'CGB-002-298E_080307154954.pep.xml' 'CGB-002-298E.pep.xml' 'CGB-002-298F_080307173448.pep.xml' 'CGB-002-298F.pep.xml' 'interact.xml' -L'7'" Skipping file interact.xml, which has the same name as the output file ... file 1: CGB-001-289U.pep.xml file 2: CGB-001-289V.pep.xml file 3: CGB-001-289W.pep.xml file 4: CGB-001-289Y.pep.xml file 5: CGB-001-289Z.pep.xml file 6: CGB-001-299A.pep.xml file 7: CGB-001-299B.pep.xml file 8: CGB-001-299C.pep.xml file 9: CGB-001-299D.pep.xml file 10: CGB-001-299E.pep.xml file 11: CGB-001-299F.pep.xml file 12: CGB-001-299U.pep.xml file 13: CGB-001-299V.pep.xml file 14: CGB-001-299W.pep.xml file 15: CGB-001-299X.pep.xml file 16: CGB-001-299Y.pep.xml file 17: CGB-001-299Z.pep.xml file 18: CGB-001-300A.pep.xml file 19: CGB-001-300B.pep.xml file 20: CGB-001-300C.pep.xml file 21: CGB-001-300D.pep.xml file 22: CGB-001-300E.pep.xml file 23: CGB-001-300F.pep.xml file 24: CGB-001-300U.pep.xml file 25: CGB-001-300V.pep.xml file 26: CGB-001-300W.pep.xml file 27: CGB-001-300X.pep.xml file 28: CGB-001-300Y.pep.xml file 29: CGB-001-301A.pep.xml file 30: CGB-001-301B.pep.xml file 31: CGB-001-301C.pep.xml file 32: CGB-001-301D.pep.xml file 33: CGB-001-301E.pep.xml file 34: CGB-001-301F.pep.xml file 35: CGB-001-301U.pep.xml file 36: CGB-001-301V.pep.xml file 37: CGB-001-301W.pep.xml file 38: CGB-001-301X.pep.xml file 39: CGB-001-301Y.pep.xml file 40: CGB-001-301Z.pep.xml file 41: CGB-002-297A.pep.xml file 42: CGB-002-297B.pep.xml file 43: CGB-002-297C.pep.xml file 44: CGB-002-297D.pep.xml file 45: CGB-002-297E.pep.xml file 46: CGB-002-297F.pep.xml file 47: CGB-002-297U.pep.xml file 48: CGB-002-297V.pep.xml file 49: CGB-002-297W.pep.xml file 50: CGB-002-297X.pep.xml file 51: CGB-002-297Y.pep.xml file 52: CGB-002-297Z.pep.xml file 53: CGB-002-298A.pep.xml file 54: CGB-002-298B.pep.xml file 55: CGB-002-298C.pep.xml file 56: CGB-002-298D.pep.xml file 57: CGB-002-298E_080307154954.pep.xml file 58: CGB-002-298E.pep.xml file 59: CGB-002-298F_080307173448.pep.xml file 60: CGB-002-298F.pep.xml processed altogether 114484 results results written to file /data/www/htdocs/qInteract/data2/ tilo_20081214124503/tilo_3527/interact.shtml command completed in 23 sec running: "/opt/tpp/x86_64/bin/PeptideProphetParser 'interact.xml' LEAVE DECOYPROBS DECOY=REV" Using Decoy Label "REV". Decoy Probabilities will be reported. (SEQUEST) (leaving deltacn* entries) init with SEQUEST trypsin MS Instrument info: Manufacturer: Thermo Scientific, Model: LTQ FT, Ionization: ESI, Analyzer: FTMS, Detector: unknown PeptideProphet (TPP v4.1 JETSTREAM rev 1, Build 200812051718 (linux)) akel...@isb read in 28141 1+, 33067 2+, 7493 3+, 314 4+, and 13 5+ spectra Initialising statistical models ... --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
