I did try to use the trunk but I couldn't get it to compile on this
machine. GCC4.4 was installed just recently and the conflicts make it
tough going. Plus, I'm okay at commenting things out but I only have
basic C++ skills.
Judging by the comments in the code, the _senserr.txt file isn't
needed in headless labkey mode.
CPAS ran the command:
"ProteinProphet 'UPS1-01.pep.xml' 'UPS1-01.prot.xml' XML NOPLOT"
ProteinProphet is looking for PLOT_PNG && getIsInteractiveMode() but
should have been looking for just getIsInteractiveMode() first. I
commented out the "if" blocks.
datafile = OUTFILE+"_senserr.txt"; // populate the filename to get
an output file
if (PLOT_PNG && getIsInteractiveMode() && !PAPER_FIGURES) {
// it's going to get deleted, so write to tmp dir
datafile += ".tmp.XXXXXX";
replace_path_with_webserver_tmp(datafile); // write this in
tmpdir
safe_fclose(FILE_mkstemp(datafile)); // create then close a
uniquely named file
}
writeErrorAndSens(datafile, INCLUDE_GROUPS ); // calculate error
and sensitivity, write data file optionally
if (PLOT_PNG && getIsInteractiveMode()) { // TPP (web oriented) vs
LabKey (headless) usage style
writeScript(OUTFILE, datafile, num_prots);
}
Thanks agian for your quick responses.
Bill
--~--~---------~--~----~------------~-------~--~----~
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To post to this group, send email to spctools-discuss@googlegroups.com
To unsubscribe from this group, send email to
spctools-discuss+unsubscr...@googlegroups.com
For more options, visit this group at
http://groups.google.com/group/spctools-discuss?hl=en
-~----------~----~----~----~------~----~------~--~---
