Hi, I would like to continue an old thread: http://groups.google.com/group/spctools-discuss/browse_thread/thread/4fd1ce8369511c8c/5b357a153c4a1b24?lnk=gst&q=viewing+spectrum#5b357a153c4a1b24, which has already been taken off.
My problem is similar, but I have tried my best to verify that all the places referring to the raw data "path" are consistent, as advised by Jimmy in the thread. What I did was: I made a Tandem DB search at one folder level (e.g. c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/P00158), generating a set of .raw.tandem files. But later, for the reason of trying to combine 529 mzXML files together from separate folders, I moved all the mzXML and associated .raw.tandem files to another folder level (c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/). I know of this spectra viewing problem if the files were relocated, so I used a text replacing application to ensure that all .raw.tandem and .raw.tandem.params files with the string "c:/Inetpub/wwwroot/ISB/ data/OC/OGEmRPTD10/P00158" were replaced to "c:/Inetpub/wwwroot/ISB/ data/OC/OGEmRPTD10/". Only then I generated the .raw.tandem.pep.xml files from the modified .raw.tandem files and then the interact.pep.xml file. But the error still persists: command "C:\Inetpub\tpp-bin\tar.exe -tzf c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/ HUO00159S00168GL05B01.raw.tandem.pep.tgz "*HUO00159S00168GL05B01.raw. 0659.0659.3.dta" > /dev/null" failed: Operation not permitted Error - cannot read spectrum; tried direct .dta, from mzXML/mzData and from .tgz Below is an example of a spectra path that I tried to track: Spectra URL = &Dta=c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/ HUO00159S00168GL05B01.raw.tandem.pep/HUO00159S00168GL05B01.raw. 0660.0660.2.dta& Interact.pep.xml file = <interact_summary filename="c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/ OGEmRPTD10_Tandem_interact.pep.xml" directory="C:/Inetpub/wwwroot/ISB/ data/OC/OGEmRPTD10"> <inputfile name="HUO00159S00168GL05B01.raw.tandem.pep.xml"/> <msms_run_summary base_name="c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/ HUO00159S00168GL05B01.raw.tandem.pep" <search_summary base_name="c:/Inetpub/wwwroot/ISB/data/OC/OGEmRPTD10/ HUO00159S00168GL05B01.raw.tandem.pep" <parameter name="spectrum, path" value="c:/Inetpub/wwwroot/ISB/data/OC/ OGEmRPTD10/HUO00159S00168GL05B01.raw.mzXML"/> HUO00159S00168GL05B01.raw.tandem.pep.xml file = <parameter name="spectrum, path" value="c:/Inetpub/wwwroot/ISB/data/ OC/OGEmRPTD10/HUO00159S00168GL05B01.raw.mzXML"/> Sorry for this long and unreadable email, but I really don't know what else I might have missed out, and I would hate to redo the Tandem search for 529 mzXML files. Would really appreciate some suggestions and advice. Thanks in advance! Bernard --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
