Perhaps you could upload the .dat file to ftp://insilicos.serveftp.net/pub and I can investigate. Zip it up with the database you used, and the mzXML file (so, everything needed to run xinteract).
Brian -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of andreas quandt Sent: Friday, July 10, 2009 12:52 AM To: [email protected] Subject: [spctools-discuss] Re: parsing error for pepXML from mascot result hey brian, its 4.2.1 in that case ;-) Brian Pratt wrote: > What version of the software are you using? > > Brian > > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of andreas quandt > Sent: Thursday, July 09, 2009 5:50 AM > To: [email protected] > Subject: [spctools-discuss] parsing error for pepXML from mascot result > > > dear list, > > i analyzed a few samples with mascot and converted the dat file > successfully to pepXML (only error: scan number cannot be found). > afterwards i was running xinteract on all created pep.xml files > (arguments: l -dDECOY_ -OAlIwp). > this was also successful but when i want to display the results, i get > an error message: > > unable to read pepxml file: error parsing pepxml file: XML parsing > error: mismatched tag, at xml file line 1048198, column 2 > > when looking at the file, the line contains following tag: </search_hit>. > the same happens when using iprophet. here the error message is the same > and when jumping to the indicated line, the same tag appears. > > does anyone of you know what's going wrong and/or know how to fix this? > > many thanks in advance, > andreas > > > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
