I try to do tandem search for MS raw data (thermo, LTQ-FT) using TPP
4.2. It seems the search is endless, after it shows "valid models".
There is no more progress from this point. could anyone help?
Below shows details of my search:
# Commands for session MID5TJ9HX on Sat Jul 25 19:16:23 2009
# BEGIN COMMAND BLOCK
###### BEGIN Command Execution ######
[Sat Jul 25 19:16:24 2009] EXECUTING: run_in c:/Inetpub/wwwroot/ISB/
data; tandem c:/Inetpub/wwwroot/ISB/data/
090420MouseBrain_hydrazine1_A01.tandem.params
OUTPUT:
X! TANDEM 2 (2007.07.01.3)
Loading spectra ..... loaded.
Spectra matching criteria = 8708
Pluggable scoring enabled.
Starting threads . started.
Computing models:
1234567890123456789012345678901234567890123456789 | 50 ks
0123456789012345678901234567890123456789012345678 | 100 ks
901
sequences modelled = 103 ks
Model refinement:
Creating report:
initial calculations ..... done.
sorting ..... done.
finding repeats ..... done.
evaluating results ..... done.
calculating expectations ..... done.
writing results ..... done.
Valid models = 210
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