Dear All,

Firstly, apologies that this is going to be a bit of a rambling post.

Over the past 12 months I've been working on what is effectively an
alternative interface to the TPP vs Petunia, tailored towards giving a
very simple front-end for users of our central proteomics facilities,
fully automating submission to multiple search engines, and
distributing jobs over a GridEngine cluster. There's a simple MySQL DB
backend that tracks data submissions, searches, and results. The web
app is written in Perl using the catalyst framework, and then there
are a bunch of perl pipeline scripts which invoke the TPP tools etc.

Lots of similar functionality is present in other packages such as
CPAS, and in Petunia itself as it is continuously improved, but for
various reasons we decided to re-invent the wheel, and have come up
with something that works very nicely for us. I'm now starting the
process of requesting clearance from the University to release the
software. There's a new open source release procedure here and I
really want to make sure anything useful our software contains can be
contributed to the TPP project.

Given that the open source release procedures here are very new, and
that in the past software has been released under relatively strict
non-commercial licenses that wouldn't allow us to give back to the TPP
project I wondered whether anyone had any tips for arguing the case
for a LGPL/GPL license? Are other people developing custom interfaces/
pipelines for the TPP tools, particularly if targetted at core
facility usage? I'd like to be able to convincingly argue that others
would benefit from our work, but moreover that we could benefit from
people being interested in and potentially collaborating.

Thanks, and thanks to the TPP developers for all their freely
available work! I hope to be able to give something back soon!

Dave Trudgian
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