Hi all, I'm part of the Cardiovascular Proteomics Center at Boston University School of Medicine, and we use the TPP extensively in our experimental workflow. We wanted to perform differential analysis on the gene ontology terms associated with proteins in protein lists generated by ProteinProphet, so we wrote some software to do that, and presented it as a poster at ASMS this past June (poster number WPB 049).
The software is called STRAP (the Software Tool for Rapid Annotation of Proteins), and is freely available (it's open source) at http://www.bumc.bu.edu/cardiovascularproteomics/strap/). It takes protein lists as input (in several formats, including protXML files from the TPP) and generates protein annotation tables, and a variety of GO charts to aid individual and differential analysis of proteomics data. We'd love to hear your feedback! Let us know if STRAP has helped you, if you find any bugs, or if you have any feature requests. Regards, Vivek Bhatia --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
