Hello Robert, It is a bit difficult from your message to get an complete picture of your workflow. In our workflow, when using multiple search engines we combine the search result using the iProphet tool. Enabling the force fitting model is a very dangerous approach. Your final results could have many false positives unless you include decoy sequences in your databas as an independent measure of error in your final protein list. -David
On 8/11/09, Robert <[email protected]> wrote: > > Concerning my previous post about "lost" peptides in the TPP (X! > Tandem/Peptide+ProteinProphet, v4.2) > > Checking "Force the fitting of the mixture model (bypass automatic > mixture model checks)" indeed significantly increases the number of > assigned peptides to a protein and therefore the sequence coverage. > > Now also the peptides assigned to a protein by OMSSA are included > > Regards, Robert > > > > -- Sent from my mobile device --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
