In general, use ACCMASS if you have high mass accuracy precursor
masses.
On Aug 7, 10:40 am, Mike Coleman <[email protected]> wrote:
> What PeptideProphet options are recommended for SEQUEST output? I
> notice that specifying DECOY works a bit better than no options, and
> adding NONPARAM seems to work even a bit better still. Any other
> suggestions?
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