I like the idea of using junction points. But for some reason it's
still not working. I installed TPP on the C: drive, and I made a
junction point for the SEQUEST location and a junction point for the
data folder.
Now, I'm getting errors when I run a database search.
E.G.:
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/005a.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/005b.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/005c.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/020a.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/020b.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/020c.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/060a.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/060b.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/060c.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/900a.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/900b.pep.xml
[ Unreadable! ]
* c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/900c.pep.xml
[ Unreadable! ]
run_in c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09; c:\Inetpub
\tpp-bin\runsearch -pc:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/
sequest.params -P15 005a.mzXML
'run_in' is not recognized as an internal or external command,
operable program or batch file.
Command FAILED
Command 2 [Mon Aug 31 17:56:16 2009] [ Show / Hide ]
run_in c:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09; c:\Inetpub
\tpp-bin\runsearch -pc:/Inetpub/wwwroot/ISB/data/PAe000163_test_9-1-09/
sequest.params -P15 005b.mzXML
'run_in' is not recognized as an internal or external command,
operable program or batch file.
Command FAILED.
-Kris
On Aug 24, 1:07 pm, "Brian Pratt" <[email protected]> wrote:
> You can compile that with gcc and mingw. But:
>
> You might prefer to have a go with symbolic links (junction points, in
> windows-world):
>
> http://en.wikipedia.org/wiki/NTFS_junction_point
>
> as discussed in a different thread today:
>
> http://groups.google.com/group/spctools-discuss/msg/f8a5637d11bddb15?...
>
> The idea would be to create a directory c:\xcalibur that is just a pointer
> to d:\xcalibur
>
> Good luck!
>
> Brian
>
> -----Original Message-----
> From: [email protected]
>
> [mailto:[email protected]] On Behalf Of Kris
> Sent: Sunday, August 23, 2009 4:28 PM
> To: spctools-discuss
> Subject: [spctools-discuss] Re: specify the location of sequest
>
> I can't seem to get microsoft visual studios 2005 professional
> edition. Is there any other software I could possibly use to compile
> the software? Or could I even just have someone else compile it for me
> and send me what I need?
>
> Thanks,
> Kris
>
> On Aug 7, 2:55 pm, Jimmy Eng <[email protected]> wrote:
> > Unfortunately you'll need to edit and recompile runsearch1.c (around
> > line 165) which is in the TPP's src/util/ directory. Follow up here if
> > that's something you need assistance with.
>
> > Kris wrote:
> > > Hi everyone,
>
> > > I've searched the forums, but I can't seem to find where you specify
> > > the path for SEQUEST.
>
> > > When I run a database search, I get the following error: Cannot find
> > > Sequest executable in c:\xcalibur\system\programs\bioworksbrowser\
>
> > > I have everything installed on the D drive of my computer. I think I
> > > have everything configured correctly except for the location of
> > > SEQUEST. SEQUEST is located at d:\xcalibur\system\programs
> > > \bioworksbrowser\. Which file do I have to modify to set the sequest
> > > path to my D: drive?
>
> > > Thanks,
> > > Kris
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