Turns out these searches were run through Mascot outside of the TPP tools. The result is that the spectrum viewer link didn't work because there's no scan number information available, due to how the mgf files were created, and the resulting analysis file names (dat file translated to pep.xml) did not seem to follow any expected convention.
Here's the recipe to follow for running Mascot if you want full compatibility with the TPP: http://tools.proteomecenter.org/wiki/index.php?title=TPP:Mascot_and_the_TPP Try following the steps in the wiki page and report back if you still have problems viewing any of the results. Good luck! On Wed, Sep 30, 2009 at 6:05 PM, zeyu sun <[email protected]> wrote: > Sorry to bother everybody here. > I have a problem with the pepXML viewer: when I finish the XInteract run, > I'm not able to open COMET spectrum view by clicking the ion tab. Does > anyone have the same problem here? > thanks > > -- > Zeyu Sun > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
