I was looking at the line "Tandem really took 30+ minutes to load that 20mb file?" - I didn't see anything that size other than .tar.gz files. Sounds like I'm looking at a different file set than you are - perhaps I lost the thread of the conversation somewhere along the way.
In any event, it's a straightforward use of RAMPAdapter. It might be interesting to compare it to the time needed to load the mzXML equivalent - that still uses tandem's own reader code. Brian On Mon, Oct 5, 2009 at 5:43 PM, Matt Chambers < [email protected]> wrote: > > What file are you talking about? I was referring to > DP-dp_2strun_newpupi_22.mzML > in > > http://www.peptideatlas.org/repository/tmp/DP_Opti_Newpupi_filter_mzML.tar.gz > which is a 331k file with only chromatograms in it. The other file is > DP-dp_2strun_newpupi_15.mzML > which is 23mb with both spectra and chromatograms. > The WIFF has two samples, but only one sample has spectra. > > -Matt > > > Brian Pratt wrote: > > Matt, > > > > FWIW that's actually a 78MB file when extracted from the gzipped > > tarball (95MB in its mzXML version). Not sure if that colors your > > thinking. It's RAMPAdapter doing the heavy lifting. > > > > Brian > > > > On Mon, Oct 5, 2009 at 12:47 PM, Zhi Sun <[email protected] > > <mailto:[email protected]>> wrote: > > > > > > Hi Matt, > > > > Actually the tandem took longer time on loading the smaller mzML > > file, which > > is only 331k. I think this is a MIDAS run. > > > > Zhi > > > > > > -----Original Message----- > > From: [email protected] > > <mailto:[email protected]> > > [mailto:[email protected] > > <mailto:[email protected]>] On Behalf Of Matthew > > Chambers > > Sent: Monday, October 05, 2009 12:40 PM > > To: [email protected] > > <mailto:[email protected]> > > Subject: [spctools-discuss] Re: msconvert generated mzML file > > > > > > OK. It worked as expected. Your spectra look like I'd expect QQQ full > > spectra to look: messy... oops, I mean a signal-rich. :) Tandem > > really > > took 30+ minutes to load that 20mb file? That might have more to > > do with > > Brian's observation that Insilicos Viewer couldn't read it. I > > can't see > > why it would be problematic looking at the file though. Maybe the > > presence of chromatograms? Zhi, is this a MIDAS run? > > > > -Matt > > > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
