I installed TPP 4.3.1 on a RHEL 5.3 linux system. When I click on a protein name in the pepXML viewer, the COMET Sequence View page opens up correctly. However, in the Protein Prophet protXML viewer, after clicking on a peptide sequeunce, when I click on the protein name, I get this message from the new window that opens:
Error - no database file specified. The link it tried to open was: http://192.168.117.132/tpp/cgi-bin/comet-fastadb.cgi?Db=&Pep=CCAADDKEACFAVEGPK&MassType=1&sample_enzyme=trypsin&min_ntt=0 As you can see the field after Db= is blank. For comparison, with the pepXML veiwer when clicking on protein name, the COMET Sequence page does have the database name in the address field, for example: http://192.168.117.132/tpp/cgi-bin/comet-fastadb.cgi?Ref=gi|1351907|sp|P02769|ALBU_BOVIN&Db=/home/sorcerer/fasta/swissprot.fasta&Pep=CCAADDKEACFAVEGPK&MassType=1&sample_enzyme=trypsin&min_ntt=0 I took these example from the same TPP analysis. Thanks for any help, Pat --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
