Hello Nick, You can run PeptideProphet once to find the probability threshold that satisfies your criteria. You can then rerun the pipeline, this time including ProteinProphet with the probability cutoff you decided on in the first pass. Hope that helps.
-David On Mon, Oct 19, 2009 at 8:05 AM, NB <[email protected]> wrote: > > Hi, > > Hopefuly this is a pedestrian question. I am interested in analyzing > post-filtered peptideprophet results using proteinprophet. Outside of > exporting filtered pepprophet data (interact.pep.xml) as an excel > file, I have not discovered a way to save the post-filtered pepprophet > data as a new interact.pep.xml file for input into proteinprohet. Any > ideas? Thanks much!!! > > Nick > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
