Hi, I was hoping someone might know why my Mayu software won't work. I have been using Mayu on .pep.xml output from TPP with a fasta file that includes Decoy sequences.
The Mayu software appears to successfully read the fasta file. However, I believe it can't parse the pepxml output properly (even though I'm specifying TPP pepxml output with the command). It tells me either the file is poor or no data was specified. Should I be using peptide prophet output files instead of peptide prophet input files? Should I add something to the Mayu software, so that it can successfully parse the TPP pepxml format? I don't really understand why it doesn't work. The files get successfully parsed in the TPP Analyze Peptide (peptide prophet). Any help would be appreciated. -Kris --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
