Hi guys, I'm running a couple of searches with an un-annotated datbase. As such I would like to take the results from the prot.xml file and run a blastP search with the sequences against an annotated related databases. Is there any easy way to export fasta sequences of a search together with their protein ID? I've only come up with a very roundabout way using excel and a couple of other utilities which is very labour intensive. If there is any third party prot.xml parsing utility or such that anyone on this board is using that would be very much appreciated. Even just exporting a list of protein IDs that does not, like now, use several IDs per line would be useful.
Any hints from the community? Hoping I'm just being thick here... -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=.
