Sounds like the classic browser timeout issue:

http://groups.google.com/group/spctools-discuss/search?hl=en&group=spctools-discuss&q=browser+timeout&qt_g=Search+this+group

I think you're pretty much doing what has to be done.

Brian

On Fri, Dec 11, 2009 at 7:14 AM, gkayihan <[email protected]> wrote:

> Hi,
> I am trying to run a sequest search with and MZXML file we got from a
> collaborator on TPP. It  looks like after 10 hours of search, sequest
> stops and the last out and dta file written in the folder is created
> around that time. however, when i look at TPP it looks like it is
> still running. it does not add anymore line to the output or write new
> dta or out files but continues to say "command is running". I
> basically log out and log on to go with the rest of the analysis .
> However I am a bit worried if everything is fine and this is normal?
> I would really appreciate your input
> sincerely
> Gogce
>
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