Hi everybody,
I'm new to ISB/SPC Trans Proteomic Pipeline, I have just installed. I have
faced many difficulty layers to solve compatibility problems between
internet explorer, Java, perl , visual basic+ ...etc in fin I managed to get
it installed.

my my aim is to get my mascot search data(in .dat format) converted to
protXML format:
I have the following error every time I try to convert my mzXML files to
pepXML:
*
*
*command "c:\Inetpub\tpp-bin\Mascot2XML
c:/Inetpub/wwwroot/ISB/data/F981122.dat
-Dc:/Inetpub/wwwroot/ISB/data/ipi.HUMAN.v3.50.fasta -Etrypsin -desc" failed:
Unknown error*
*
*
*also*
* *
*c:/Inetpub/wwwroot/ISB/data/F981122.pep.xml [ Unreadable! ]*
*
*
*
*
Thank you

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