Dear All, I was just browsing the gpm site and reading about tandem. It says that peptideprophet and proteinprophet need not be used with X!Tandem. Can someone explain (in simple terms please) how TPP uses tandem result data to assign probabilities?
Another naive question is about calculation of FDR from X!Tandem results? How should it be done? For reference- Quoting from http://www.thegpm.org/TANDEM/index.html "Unlike some... ... Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used." -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
