Hi Charles, For windows, is D drive local on your machine?
I am trying to right data to mapped network drive, when I run XInteract from GUI, it hangs on PepXMLViewer.cgi forever, do you have any idea. Regards Val On Thu, Mar 11, 2010 at 1:40 PM, Charles <[email protected]> wrote: > Hello, > > I've searched around for this topic and found articles on how to > relocate the entire directory structure in windows (which I've done > and it works out) by changing C:\ to D:\ in the apache2/conf/ > httpd.conf file, copying the entire folder hierarchy to D:\ and > changing the WEBSERVER_ROOT and PATH to D:\. I wanted to do something > similar in Ubuntu 9.10 (and other linux distros) so I installed the > TPP v4.3 rev 1 following the instructions provided by > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.2.1:_Installing_on_Ubuntu_9.04 > . > All the binaries/scrips I want to use run fine, namely tandem.exe, > Tandem2XML, and xinteract (I prefer to use the command line instead of > the gui). The only issue is viewing the resultant data files through > the browser. Below, I've included the httpd.conf file (as shown in > the installation tutorial). > > The first problem is that while the tpp_gui.pl script opens in the > browser (http://localhost/tpp/cgi-bin/tpp_gui.pl), I get a "403 > Forbidden, You don't have permission to access /tpp/data/ on this > server" when I navigate to http://localhost/tpp/data. This occurs > even if I give the /tpp/data directory read/write permission and even > change owner to the user. > > The second is, I would like to analyze my data in another directory, > let's say /home/charles/data while keeping the binaries/scripts in > the /usr/local/apps/tpp directory. I can only think of the following > changes: > > ScriptAlias /tpp/data "/usr/local/apps/tpp/data" ---> ScriptAlias / > tpp/data "/home/charles/data" > <Directory "/usr/local/apps/tpp/data"> ---> <Directory > "/home/charles/ > data"> > > However, I still get the 403 Forbidden error. Does anyone know of how > to make this arrangement work? Also, if you know of any instances of > hard-coded directory variables that I may need to change, especially > in xinteract, it would be much appreciated. > > Thanks, > Charles > > ------------------------ BEGIN HTTPD.CONF > ------------------------------- > > <VirtualHost *:80> > > DocumentRoot /var/www > #SetEnv WEBSERVER_ROOT /usr/local/apps/tpp > SetEnv WEBSERVER_ROOT /var/www > > > # Access logs > <IfModule log_config_module> > # Directives defining formatting of access log output > LogFormat "%h %l %u %t \"%r\" %>s %b \"%{Referer}i\" > \"%{User-Agent}i > \"" combined > LogFormat "%h %l %u %t \"%r\" %>s %b" common > > <IfModule logio_module> > # You need to enable mod_logio.c to use %I and %O > LogFormat "%h %l %u %t \"%r\" %>s %b \"%{Referer}i\" > \"%{User- > Agent}i\" %I %O" combinedio > </IfModule> > CustomLog /var/log/tpp/tpp_access_log common > </IfModule> > > <Directory /> > Options FollowSymLinks > AllowOverride None > </Directory> > #<Directory /usr/local/apps/tpp/> > <Directory /var/www/> > Options Indexes FollowSymLinks MultiViews > AllowOverride All > Order allow,deny > allow from all > </Directory> > > ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/ > <Directory "/usr/lib/cgi-bin"> > AllowOverride None > Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch > Order allow,deny > Allow from all > </Directory> > > ErrorLog /var/log/apache2/error.log > > # Possible values include: debug, info, notice, warn, error, crit, > # alert, emerg. > LogLevel warn > > CustomLog /var/log/apache2/access.log combined > > # directory to store data for web browser viewing > ScriptAlias /tpp/data "/usr/local/apps/tpp/data" > <Directory "/usr/local/apps/tpp/data"> > AllowOverride None > Options Indexes FollowSymLinks Includes > Order allow,deny > Allow from all > </Directory> > > # directory for tpp's html resources (css, js, images, etc) > ScriptAlias /tpp/html "/usr/local/apps/tpp/html" > <Directory "/usr/local/apps/tpp/html"> > AllowOverride None > Options Includes Indexes FollowSymLinks MultiViews > Order allow,deny > Allow from all > </Directory> > > # directory for tpp's schema resources > <Directory "/usr/local/apps/tpp/schema"> > AllowOverride None > Options Includes Indexes FollowSymLinks MultiViews > Order allow,deny > Allow from all > </Directory> > > # directory for tpp's executable files > ScriptAlias /tpp/cgi-bin "/usr/local/apps/tpp/cgi-bin" > <Directory "/usr/local/apps/tpp/cgi-bin"> > #AllowOverride AuthConfig Limit > AllowOverride All > Options Indexes FollowSymLinks MultiViews ExecCGI +Includes > AddHandler default-handler .jpg .png .css .ico .gif > AddHandler cgi-script .cgi .pl > Order allow,deny > Allow from all > SetEnv WEBSERVER_ROOT /usr/local/apps > #SetEnv WEBSERVER_ROOT /var/www > </Directory> > </VirtualHost> > > -------------------------- END HTTPD.CONF > -------------------------------- > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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