Dear All:
Several days ago, I post the message to seek some help for analyzing big size 
file. Now when I do the peptide and protein analyse, there are the following 
error information coming out:
running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml""
command completed in 11 sec
Error: multiple databases referenced by input files: 
C:\Xcalibur\database\sprot_57.12_human_both.fasta,C:\Xcalibur\database\uniprot\uniprot_15.12\sprot_57.12_human_both.fasta
Only ONE database must be specified

command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.7 -l6 -Op -drev 
-X-m1.0-nK,6-nR,10 -A-lKR-r0.5 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_12_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_15_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_17_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_1_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_25_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_26_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_27_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_28_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_29_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_30_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_31_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_32_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_33_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_34_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_35_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_36_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_37_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_38_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_39_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_41_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_42_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_43_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_45_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_47_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_49_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_53_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_57_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_65_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_73_20100127_VE.pep.xml
 
c:/Inetpub/wwwroot/ISB/data/eileen/a549/Velo_er/zip_files/FRU753_9_20100127_VE.pep.xml"
 failed: Operation not permitted
Command FAILED


When I do the change the file to pep.xml, I use the specify the sequest 
parameter file which has the 
“C:\Xcalibur\database\sprot_57.12_human_both.fasta” database though the sequest 
search is using 
“C:\Xcalibur\database\uniprot\uniprot_15.12\sprot_57.12_human_both.fasta “

That means I must run the pep.xml under the same subfolder with the original 
sequest search results, right?
Just because the file is so big and really took me long time to finish the 
pep.xml.

Thank you for your help!

Eileen


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