Hi All, I'd like to have some opinions on how to validate a dataset with no_enzyme specificty using PeptideProphet ?
Until now it looks like it's difficult to get a model working. I converted to pepxml using -Enonspecific from Mascot or Sequest by it looks like the model has difficulty. I'm wondering who has experience with nonspecific samples and validation. Should I turn off some standard features like -OFNM ??? Thanks for any help. Alex -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
