The defect is really somewhere upstream - whatever created the pepxml files that went into xinteract should have escaped those characters.
On Wed, Apr 14, 2010 at 11:25 PM, Simon Michnowicz < [email protected]> wrote: > Dear Group, > I am running a Peptide Prophet search but xinteract breaks. The error > message is : > "Syntax error parsing XML.not well-formed (invalid token)" > > The offending line (in a peptide-xml file) is > > <alternative_protein protein="tr|Q78E99|MRXR<gamma>" > protein_descr="homolog protein (Fragment) Tax_Id=10118 [Rattus sp]" > num_tol_term="2" peptide_prev_aa="K" peptide_next_aa="D"/> > > Should the <gamma> entry should be <gamma> ?? > Is there an easy fix to this problem? > Thanks > Simon Michnowicz > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
