Hi Brett, We just ran into this issue on the spctools-dev alias this week also. I took a quick look at the code, and this function appears to be related to new handling for phosphorylation. It looked to me like you could just implement the function in k-score, and return zero without any ill effects, unless you are trying to use the new phosphorylation functionality. Then all bets are off, without someone really understanding the meaning of this function and how the multipliers applied to the score when ion_check is non-zero apply to k-score, and then testing a real implementation.
But, I think you can compile and use it with just a zero returning function. --Brendan On Apr 21, 4:11 pm, "[email protected]" <[email protected]> wrote: > Hi everyone, we are trying to compile the most recent version of x! > tandem with the k-score plugin, but we ran into a snag > > Tandem now seems to require that plugins implement an ion_check() > method. > > // finds a specific ion > virtual float ion_check(const unsigned long _v,const size_t _d) = 0; > > This method is declared as a pure virtual function (which means > plugins MUST implement it) and the k-score files included here > (https://proteomics.fhcrc.org/CPAS/Project/Published%20Experiments/Tan... > ) do not seem to implement one. > > Can we copy the ion_check() implementation from mscore_tandem.cpp or > is there a K-score appropriate ion_check() we should use > > Cheers > > Brett > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group > athttp://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
