It's most logical to write the structure completely flat and use
attributes to indicate dependencies rather than nesting. That allows
removing the dependencies (MS1s) without removing the record of the
dependency and allows representing potentially complex scan event
configurations.
ProteoWizard provides snapshot binaries for all major platforms on the
TeamCity site:
http://teamcity.labkey.org:8080/viewLog.html?buildId=12704&tab=artifacts&buildTypeId=bt36&guest=1
-Matt
On 5/14/2010 2:50 PM, Gene Selkov wrote:
wouldn't it be more logical to write out this structure:
<scan num="393" msLevel="1" scanType="Full">
<scan num="394" msLevel="1" scanType="SIM">
<scan num="395" msLevel="2" scanType="Full">
<scan num="396" msLevel="1" scanType="SIM">
<scan num="397" msLevel="2" scanType="Full">
<scan num="398" msLevel="1" scanType="SIM">
<scan num="399" msLevel="2" scanType="Full">
</scan>
<scan num="400" msLevel="1" scanType="Full">
<scan num="401" msLevel="1" scanType="SIM">
<scan num="402" msLevel="1" scanType="SIM">
<scan num="403" msLevel="2" scanType="Full">
</scan>
rather than
<scan num="393" msLevel="1" scanType="Full">
<scan num="394" msLevel="1" scanType="SIM">
<scan num="395" msLevel="2" scanType="Full">
</scan>
<scan num="396" msLevel="1" scanType="SIM">
<scan num="397" msLevel="2" scanType="Full">
</scan>
Worth noting, too, that this is being let go in favor of msconvert from the
ProteoWizard project, which is more actively maintained than ReAdW.
Thanks for the pointer; I started looking and I am whelmed!
I was able to build it in Linux yesterday (Ubuntu 10 -- haven't
encountered any problems), but there is no chance I can build it in
Windows. I just looked at the first thing in the list of requirements,
and had to give up: it wants more than 5Gb of my disk space, and I
have only got 1Gb (it's a VM). Does it make sense to ask someone to
build and post the Windows executable? Is it one thing or many? How
difficult will it be to plant it?
Thanks,
--Gene
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