Have a look at
http://tools.proteomecenter.org/wiki/index.php?title=Main_Page

Also just searching through old postings in this group can yield a lot
of good info (it was the fastest way to the above link, for example).

Brian

On Mon, May 17, 2010 at 10:31 AM, Jesse J <[email protected]> wrote:
> I can't find any documentation on running Peptide or Protein Prophet.
> Is there any out there?
>
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