Hi Luis, Thank you to look into this. The command I used is following: ProteinProphet file.pep.xml file.prot.xml GLYC XPRESS
Thanks, Bingyun On Tue, Jul 27, 2010 at 11:36 AM, Luis Mendoza <[email protected]>wrote: > Hi Bingyun, > What is the full command (and output) that you are using to run > ProteinProphet? Make sure you are not using the NOCOVERAGE option, as > this disables said calculation. > Cheers, > --Luis > > > On Wed, Jul 21, 2010 at 11:55 AM, Bingyun <[email protected]> wrote: > > Hi, I am seeking help on using proteinPorphet command alone. I always > > used it appended to xinteract -Op, but I met some problem when I used > > this command alone. The problem is I cannot display the percentage > > coverage of proteins. There seems no options to show it. Another issue > > is the proteinlength option seemed broken. No matter whether I chose > > it or not, it always shows "0". > > > > Thank you for help. > > > > Bingyun > > > > -- > > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- Bingyun Sun, PhD Research Scientist, Hood Lab Institute for Systems Biology 1441 N 34th Street, Seattle, WA 98029 Tel: (206) 732.1350 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
