First step would be to verify that you are using the same parameters. The X!Tandem source code for CPAS and TPP should be the same, but probably the default parameters are different.
On Mon, Mar 7, 2011 at 12:20 AM, nayoung han <[email protected]> wrote: > Hello, > > I use tandem algorithm in CPAS and TPP for identification of proteins. > > I think same algorithm works in these tools. > > But, results are different. For example, number of identified peptide and > protein. > > I don't know the reason. > > I want to use X!Tandem of TPP. But, TPP result is smaller than CPAS. > > I want to know why the result is different. > > Thank you for your interest. > > Bye. > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
