Hi, The usage statement is wrong in that version. To enable that option in xinteract the flag is -R.
-David On Mar 24, 2011 11:09 AM, "tgreco" <[email protected]> wrote: > I have been experimenting with a new dataset analyzed by OMSSA > (v2.1.8), taking the pepXML output into the TPP. Currently I am > analyzing the dataset by successive commands, (1) InteractParser, (2) > PeptideProphetParser, and (3) RefreshParser. In particular the > InteractParser includes the -C -P and -Et flags, which seem to be the > most important for successful import of the OMSSA identifications. I > would like to analyze the dataset using the xinteract wrapper, but > wasn't able to invoke these previous commands with much success. In > particular the -P command does not seem to be recognized by xinteract > under general options. Is there a way to do this? > Thanks! > > -- > You received this message because you are subscribed to the Google Groups "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to [email protected]. > For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
