There's been a fix checked in to the Sashimi subversion repository that addresses a known issue with XPressPeptideParser. Hopefully that fix addresses the issue you're seeing. If not, let me know.
Since you're using linux, build XPressPeptideParser from either the trunk or branch4-5 code. On Thu, Oct 20, 2011 at 2:04 PM, Ping <[email protected]> wrote: > Hi, > > I installed tpp 4.5 on a Ubuntu 10.04 system. While I run > XPressPeptideParser on either XTandem/OMSSA serach result pep.xml, I > got this error: > > *** glibc detected *** /usr/local/src/trans_proteomic_pipeline/build/ > Ubuntu-x86_64/XPressPeptideParser: free(): invalid next size (fast): > 0x0000000001b25640 *** > ======= Backtrace: ========= > /lib/libc.so.6(+0x775b6)[0x7f8c406735b6] > /lib/libc.so.6(cfree+0x73)[0x7f8c40679e83] > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ > XPressPeptideParser[0x41af70] > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ > XPressPeptideParser[0x43f1bf] > ... > /lib/libc.so.6(__libc_start_main+0xfd)[0x7f8c4061ac4d] > /usr/local/src/trans_proteomic_pipeline/build/Ubuntu-x86_64/ > XPressPeptideParser[0x405ef9] > > I run XPressPeptideParser on total 32 files, and 10 of them got the > error. The others are fine. I debug the code, and it seems it is > something with mzXML file. > > Can anyone help? > > Thanks, > > Ping > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
