Hi,
I installed TPP 4.5.2 on a Ubuntu 12.04LTS server. The demo runs fine on
it. Then I put on a large data set. TPP reported "Command Successful" and
generated result :
1) interact.pep.xml at 415,114k in size. the interact.pep.shtml page can be
loaded from a Windows 7.
2) interact.prot.xml at 378,854k in size. when click the
interact.prot.shtml, IE reports error: lost connection.
3) I attached the log file for this analysis.
If I pulled out a small portion of my data (6 RAW files) and run peptide
prophet and protein prophet, it went through without problem and I can load
the interact.prot.shtml file.
I also tried to load the file locally with Firefox on the ubuntu server
where TPP is running, it took >5min then got error "the connection was
reset"
Any suggestions?
Thank you very much.
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# Commands for session 6QLKKRGH7 on Fri Aug 24 14:38:50 2012
# BEGIN COMMAND BLOCK
###### BEGIN Command Execution ######
[Fri Aug 24 14:38:51 2012] EXECUTING: cd /usr/local/tpp/data/NK_AG_KR;
/usr/local/tpp/bin/xinteract -Ninteract.pep.xml -p0.10 -l7 -OAPp -dReverse_
HW149_A01.xml HW149_A02.xml HW149_A03.xml HW149_A04.xml HW149_A05.xml
HW149_A06.xml HW149_A07.xml HW149_A08.xml HW149_A09.xml HW149_A10.xml
HW149_A11.xml HW149_A12.xml HW149_A13.xml HW149_A14.xml HW149_A15.xml
HW149_A16.xml HW149_A17.xml HW149_A18.xml HW149_A19.xml HW149_A20.xml
HW149_A21.xml HW149_A22.xml HW149_A23.xml HW149_A24.xml HW149_A25.xml
HW149_A26.xml HW149_A27.xml HW149_A28.xml HW149_A29.xml HW149_A30.xml
HW150_G01.xml HW150_G02.xml HW150_G03.xml HW150_G04.xml HW150_G05.xml
HW150_G06.xml HW150_G07.xml HW150_G08.xml HW150_G09.xml HW150_G10.xml
HW150_G11.xml HW150_G12.xml HW150_G13.xml HW150_G14.xml HW150_G15.xml
HW150_G16.xml HW150_G17.xml HW150_G18.xml HW150_G19.xml HW150_G20.xml
HW150_G21.xml HW150_G22.xml HW150_G23.xml HW150_G24.xml HW150_G25.xml
HW150_G26.xml HW150_G27.xml HW150_G28.xml HW150_G29.xml HW150_G30.xml
OUTPUT:
/usr/local/tpp/bin/xinteract (TPP v4.5 RAPTURE rev 2, Build 201208211650
(linux))
running: "/usr/local/tpp/bin/InteractParser 'interact.pep.xml' 'HW149_A01.xml'
'HW149_A02.xml' 'HW149_A03.xml' 'HW149_A04.xml' 'HW149_A05.xml' 'HW149_A06.xml'
'HW149_A07.xml' 'HW149_A08.xml' 'HW149_A09.xml' 'HW149_A10.xml' 'HW149_A11.xml'
'HW149_A12.xml' 'HW149_A13.xml' 'HW149_A14.xml' 'HW149_A15.xml' 'HW149_A16.xml'
'HW149_A17.xml' 'HW149_A18.xml' 'HW149_A19.xml' 'HW149_A20.xml' 'HW149_A21.xml'
'HW149_A22.xml' 'HW149_A23.xml' 'HW149_A24.xml' 'HW149_A25.xml' 'HW149_A26.xml'
'HW149_A27.xml' 'HW149_A28.xml' 'HW149_A29.xml' 'HW149_A30.xml' 'HW150_G01.xml'
'HW150_G02.xml' 'HW150_G03.xml' 'HW150_G04.xml' 'HW150_G05.xml' 'HW150_G06.xml'
'HW150_G07.xml' 'HW150_G08.xml' 'HW150_G09.xml' 'HW150_G10.xml' 'HW150_G11.xml'
'HW150_G12.xml' 'HW150_G13.xml' 'HW150_G14.xml' 'HW150_G15.xml' 'HW150_G16.xml'
'HW150_G17.xml' 'HW150_G18.xml' 'HW150_G19.xml' 'HW150_G20.xml' 'HW150_G21.xml'
'HW150_G22.xml' 'HW150_G23.xml' 'HW150_G24.xml' 'HW150_G25.xml' 'HW150_G26.xml'
'HW150_G27.xml' 'HW150_G28.xml' 'HW150_G29.xml' 'HW150_G30.xml' -L'7'"
file 1: HW149_A01.xml
file 2: HW149_A02.xml
file 3: HW149_A03.xml
file 4: HW149_A04.xml
file 5: HW149_A05.xml
file 6: HW149_A06.xml
file 7: HW149_A07.xml
file 8: HW149_A08.xml
file 9: HW149_A09.xml
file 10: HW149_A10.xml
file 11: HW149_A11.xml
file 12: HW149_A12.xml
file 13: HW149_A13.xml
file 14: HW149_A14.xml
file 15: HW149_A15.xml
file 16: HW149_A16.xml
file 17: HW149_A17.xml
file 18: HW149_A18.xml
file 19: HW149_A19.xml
file 20: HW149_A20.xml
file 21: HW149_A21.xml
file 22: HW149_A22.xml
file 23: HW149_A23.xml
file 24: HW149_A24.xml
file 25: HW149_A25.xml
file 26: HW149_A26.xml
file 27: HW149_A27.xml
file 28: HW149_A28.xml
file 29: HW149_A29.xml
file 30: HW149_A30.xml
file 31: HW150_G01.xml
file 32: HW150_G02.xml
file 33: HW150_G03.xml
file 34: HW150_G04.xml
file 35: HW150_G05.xml
file 36: HW150_G06.xml
file 37: HW150_G07.xml
file 38: HW150_G08.xml
file 39: HW150_G09.xml
file 40: HW150_G10.xml
file 41: HW150_G11.xml
file 42: HW150_G12.xml
file 43: HW150_G13.xml
file 44: HW150_G14.xml
file 45: HW150_G15.xml
file 46: HW150_G16.xml
file 47: HW150_G17.xml
file 48: HW150_G18.xml
file 49: HW150_G19.xml
file 50: HW150_G20.xml
file 51: HW150_G21.xml
file 52: HW150_G22.xml
file 53: HW150_G23.xml
file 54: HW150_G24.xml
file 55: HW150_G25.xml
file 56: HW150_G26.xml
file 57: HW150_G27.xml
file 58: HW150_G28.xml
file 59: HW150_G29.xml
file 60: HW150_G30.xml
processed altogether 348122 results
results written to file /usr/local/tpp/data/NK_AG_KR/interact.pep.shtml
command completed in 154 sec
running: "/usr/local/tpp/bin/DatabaseParser 'interact.pep.xml'"
command completed in 12 sec
running: "/usr/local/tpp/bin/RefreshParser 'interact.pep.xml'
'/home/hwang/fasta/UniRef20120717_human_Cont_Rev.fasta'"
- Building Commentz-Walter keyword tree... - Searching the tree...
- Linking duplicate entries... - Printing results...
command completed in 149 sec
running: "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml'
MINPROB=0.10 ACCMASS NONPARAM DECOY=Reverse_"
using Accurate Mass Bins
Using Decoy Label "Reverse_".
Using non-parametric distributions
(SEQUEST)
adding Accurate Mass mixture distr
init with SEQUEST trypsin
MS Instrument info: Manufacturer: Thermo, Model: LTQ Orbitrap XL, Ionization:
ESI, Analyzer: Orbitrap, Detector: UNKNOWN
PeptideProphet (TPP v4.5 RAPTURE rev 2, Build 201208211650 (linux))
AKeller@ISB
read in 0 1+, 214173 2+, 107878 3+, 17316 4+, 2111 5+, 45 6+, and 0 7+ spectra.
Initialising statistical models ...
Found 83004 Decoys, and 258519 Non-Decoys
Iterations: .........10.........20.......
WARNING: Mixture model quality test failed for charge (1+).
WARNING: Mixture model quality test failed for charge (7+).
model complete after 28 iterations
command completed in 717 sec
running: "/usr/local/tpp/bin/ProphetModels.pl -i interact.pep.xml -d Reverse_"
Analyzing interact.pep.xml ...
Reading Accurate Mass Model model +1 ...
Reading Accurate Mass Model model +2 ...
Reading Accurate Mass Model model +3 ...
Reading Accurate Mass Model model +4 ...
Reading Accurate Mass Model model +5 ...
Reading Accurate Mass Model model +6 ...
Reading Accurate Mass Model model +7 ...
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A01
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 2553 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A02
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 5475 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A03
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 8730 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A04
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 12203 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A05
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 15774 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A06
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 19807 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A07
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 24351 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A08
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 29204 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A09
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 33842 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A10
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 38662 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A11
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 43626 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A12
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 48850 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A13
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 53155 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A14
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 57441 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A15
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 61595 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A16
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 65585 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A17
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 69498 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A18
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 72913 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A19
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 76222 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A20
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 79021 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A21
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 81557 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A22
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 83952 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A23
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 86026 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A24
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 87962 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A25
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 89659 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A26
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 90812 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A27
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 91546 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A28
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 92057 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A29
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 92430 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW149_A30
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 92756 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G01
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 95218 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G02
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 97914 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G03
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 101092 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G04
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 104707 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G05
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 108418 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G06
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 112403 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G07
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 116527 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G08
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 121002 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G09
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 125549 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G10
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 129959 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G11
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 134522 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G12
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 139312 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G13
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 142995 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G14
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 147134 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G15
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 151035 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G16
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 154390 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G17
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 157601 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G18
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 160489 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G19
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 163579 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G20
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 166028 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G21
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 168239 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G22
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 170222 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G23
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 171873 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G24
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 173365 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G25
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 174417 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G26
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 175173 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G27
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 175798 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G28
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 176160 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G29
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 176471 excluded hits.
Parsing search results "/home/hwang/ProtData/NK_ctrl_KR_AG/HW150_G30
(SEQUEST)"...
=> Total of 0 hits.
=> Total of 0 decoy hits.
=> Total of 176729 excluded hits.
Warning: empty y range [0:0], adjusting to [0:1]
plot "interact.pep_FVAL.tsv" using 1:17 title "Observed" with line lc -1 ,
"interact.pep_FVAL.tsv" using 1:18 title "Model Pos" with line lc 3 ,
"interact.pep_FVAL.tsv" using 1:19 title "Model Neg" with line lc 1
^
"interact.pep_FVAL.gp", line 23: warning: Skipping data file with no valid
points
plot "interact.pep_FVAL.tsv" using 1:20 title "Observed" with line lc -1 ,
"interact.pep_FVAL.tsv" using 1:21 title "Model Pos" with line lc 3 ,
"interact.pep_FVAL.tsv" using 1:22 title "Model Neg" with line lc 1
^
"interact.pep_FVAL.gp", line 25: warning: Skipping data file with no valid
points
Warning: empty y range [0:0], adjusting to [0:1]
plot "interact.pep_PPPROB.tsv" using 2:1 title "PeptideProphet" with line lt 1
lc 3 , x notitle with line lt 0 lc -1
^
"interact.pep_PPPROB.gp", line 17: warning: Skipping data file with no valid
points
plot "interact.pep_IPPROB.tsv" using 2:1 title "iProphet" with line lt 1 lc 3
, "interact.pep_PPPROB.tsv" using 2:1 title "PeptideProphet" with line lt 1 lc
1 , x notitle with line lt 0 lc -1
^
"interact.pep_IPPROB.gp", line 17: warning: Skipping data file with no valid
points
plot "interact.pep_IPPROB.tsv" using 2:1 title "iProphet" with line lt 1 lc 3
, "interact.pep_PPPROB.tsv" using 2:1 title "PeptideProphet" with line lt 1 lc
1 , x notitle with line lt 0 lc -1
^
"interact.pep_IPPROB.gp", line 17: warning: Skipping data file with no valid
points
command completed in 30 sec
running: "/usr/local/tpp/cgi-bin/PepXMLViewer.cgi -I
/usr/local/tpp/data/NK_AG_KR/interact.pep.xml"
command completed in 47 sec
running: "/usr/local/tpp/bin/ProteinProphet 'interact.pep.xml'
'interact.prot.xml' XML"
ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original
Perl by A. Keller (TPP v4.5 RAPTURE rev 2, Build 201208211650 (linux))
(xml input) (report Protein Length) (using degen pep info)
. . . reading in /usr/local/tpp/data/NK_AG_KR/interact.pep.xml. . .
. . . read in 0 1+, 118423 2+, 53200 3+, 4865 4+, 232 5+, 10 6+, 0 7+ spectra
with min prob 0.05
INFO: mu=4.06236e-05, db_size=198468258
protein probabilities written to file
/usr/local/tpp/data/NK_AG_KR/interact.prot.xml
direct your browser to
http://172.16.1.9//usr/local/tpp/data/NK_AG_KR/interact.prot.shtml
command completed in 1921 sec
running: "/usr/local/tpp/bin/ProtProphModels.pl -i interact.prot.xml"
Analyzing interact.prot.xml ...
command completed in 6 sec
/usr/local/tpp/bin/InteractParser 'interact.pep.xml' 'HW149_A01.xml'
'HW149_A02.xml' 'HW149_A03.xml' 'HW149_A04.xml' 'HW149_A05.xml' 'HW149_A06.xml'
'HW149_A07.xml' 'HW149_A08.xml' 'HW149_A09.xml' 'HW149_A10.xml' 'HW149_A11.xml'
'HW149_A12.xml' 'HW149_A13.xml' 'HW149_A14.xml' 'HW149_A15.xml' 'HW149_A16.xml'
'HW149_A17.xml' 'HW149_A18.xml' 'HW149_A19.xml' 'HW149_A20.xml' 'HW149_A21.xml'
'HW149_A22.xml' 'HW149_A23.xml' 'HW149_A24.xml' 'HW149_A25.xml' 'HW149_A26.xml'
'HW149_A27.xml' 'HW149_A28.xml' 'HW149_A29.xml' 'HW149_A30.xml' 'HW150_G01.xml'
'HW150_G02.xml' 'HW150_G03.xml' 'HW150_G04.xml' 'HW150_G05.xml' 'HW150_G06.xml'
'HW150_G07.xml' 'HW150_G08.xml' 'HW150_G09.xml' 'HW150_G10.xml' 'HW150_G11.xml'
'HW150_G12.xml' 'HW150_G13.xml' 'HW150_G14.xml' 'HW150_G15.xml' 'HW150_G16.xml'
'HW150_G17.xml' 'HW150_G18.xml' 'HW150_G19.xml' 'HW150_G20.xml' 'HW150_G21.xml'
'HW150_G22.xml' 'HW150_G23.xml' 'HW150_G24.xml' 'HW150_G25.xml' 'HW150_G26.xml'
'HW150_G27.xml' 'HW150_G28.xml' 'HW150_G29.xml' 'HW150_G30.xml' -L'7' 154 sec
/usr/local/tpp/bin/DatabaseParser 'interact.pep.xml'
/usr/local/tpp/bin/RefreshParser 'interact.pep.xml'
'/home/hwang/fasta/UniRef20120717_human_Cont_Rev.fasta' 149 sec
/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml' MINPROB=0.10 ACCMASS
NONPARAM DECOY=Reverse_ 717 sec
/usr/local/tpp/bin/ProphetModels.pl -i interact.pep.xml -d Reverse_ 30 sec
/usr/local/tpp/cgi-bin/PepXMLViewer.cgi -I
/usr/local/tpp/data/NK_AG_KR/interact.pep.xml 47 sec
/usr/local/tpp/bin/ProteinProphet 'interact.pep.xml' 'interact.prot.xml' XML
1921 sec
/usr/local/tpp/bin/ProtProphModels.pl -i interact.prot.xml 6 sec
job completed in 3036 sec
Command Successful
