Dear TPP team, I went through a Comet analysis for a set of Qtof data (mzXML format) and when I try to view the results (pepXML) in TPP, the doteproduct, delta and most Expect value of spectrum are 'unavailable' , and as I expected, the following peptideprophet analysis failed also.
Here is my output setting for the Comet search, is there any thing wrong with it? ##################### output_sqtstream = 0 # 0=no, 1=yes write sqt to standard output output_sqtfile = 0 # 0=no, 1=yes write sqt file output_pepxmlfile = 1 # 0=no, 1=yes write pep.xml file output_outfiles = 0 # 0=no, 1=yes write .out files print_expect_score = 0 # 0=no, 1=yes to replace Sp with expect in out & sqt num_output_lines = 5 # num peptide results to show show_fragment_ions = 0 # 0=no, 1=yes for out files only sample_enzyme_number = 1 # Sample enzyme which is possibly different than the one applied to the search. ##################### Any ideas? Thank you! -- *SunSun* -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
